Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V5G10_RS02335 Genome accession   NZ_CP145086
Coordinates   447906..448571 (+) Length   221 a.a.
NCBI ID   WP_050170995.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_C_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442906..453571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G10_RS02310 (V5G10_02310) cysT 443026..443864 (-) 839 Protein_450 sulfate ABC transporter permease subunit CysT -
  V5G10_RS02315 (V5G10_02315) - 444050..444382 (+) 333 WP_003687908.1 hypothetical protein -
  V5G10_RS02320 (V5G10_02320) - 444709..445218 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G10_RS02325 (V5G10_02325) - 445448..446029 (-) 582 WP_003698180.1 superoxide dismutase -
  V5G10_RS02330 (V5G10_02330) dnaB 446192..447598 (+) 1407 WP_047920816.1 replicative DNA helicase -
  V5G10_RS02335 (V5G10_02335) pilH 447906..448571 (+) 666 WP_050170995.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G10_RS02340 (V5G10_02340) pilI 448603..449211 (+) 609 WP_353425388.1 type IV pilus modification protein PilV Machinery gene
  V5G10_RS02345 (V5G10_02345) pilJ 449208..450170 (+) 963 WP_082277595.1 PilW family protein Machinery gene
  V5G10_RS02350 (V5G10_02350) pilK 450149..450745 (+) 597 WP_082277593.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G10_RS02355 (V5G10_02355) pilL 450747..451220 (+) 474 WP_192941126.1 PilX family type IV pilin Machinery gene
  V5G10_RS02360 (V5G10_02360) - 451290..451598 (-) 309 WP_050170999.1 AzlD family protein -
  V5G10_RS02365 (V5G10_02365) - 451595..452303 (-) 709 Protein_461 AzlC family ABC transporter permease -
  V5G10_RS02370 (V5G10_02370) dut 452469..452921 (+) 453 WP_003702446.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24699.21 Da        Isoelectric Point: 9.4068

>NTDB_id=937079 V5G10_RS02335 WP_050170995.1 447906..448571(+) (pilH) [Neisseria gonorrhoeae strain WHO_C_2024]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGTVN
NQCDFGKKGQGMLAFGDKNDNKAYDGDTKDVFLRNVVLNDDINDKRINYTFNHIAFGQIQPTAERVVWTFNQNGTFGYLP
DQNLKNNSKFVYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDARAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=937079 V5G10_RS02335 WP_050170995.1 447906..448571(+) (pilH) [Neisseria gonorrhoeae strain WHO_C_2024]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCAAC
AACCAGTGCGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TACTAAGGATGTTTTTCTCCGCAACGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTCAAATACAGCCGACTGCCGAACGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCC
GATCAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATGCGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

90.045

100

0.9