Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G01_RS10810 Genome accession   NZ_CP145083
Coordinates   2055817..2056242 (-) Length   141 a.a.
NCBI ID   WP_353428678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_D_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2050817..2061242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G01_RS10790 (V5G01_10835) msrAB 2051262..2052830 (-) 1569 WP_003687002.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  V5G01_RS10795 (V5G01_10840) pilA 2052976..2054229 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  V5G01_RS10800 (V5G01_10845) - 2054344..2054484 (-) 141 WP_154274761.1 hypothetical protein -
  V5G01_RS10805 (V5G01_10850) - 2054498..2055262 (-) 765 Protein_2089 opacity family porin -
  V5G01_RS10810 (V5G01_10855) pilE 2055817..2056242 (-) 426 WP_353428678.1 pilin Machinery gene
  V5G01_RS10815 (V5G01_10860) lpxC 2056348..2057271 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G01_RS10820 (V5G01_10865) pilE 2057802..2058227 (-) 426 WP_353428679.1 pilin Machinery gene
  V5G01_RS10825 (V5G01_10870) - 2058323..2058739 (-) 417 Protein_2093 pilin -
  V5G01_RS10830 (V5G01_10875) - 2059199..2060143 (-) 945 WP_003689774.1 IS110-like element ISNgo3 family transposase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15121.72 Da        Isoelectric Point: 5.9288

>NTDB_id=937063 V5G01_RS10810 WP_353428678.1 2055817..2056242(-) (pilE) [Neisseria gonorrhoeae strain WHO_D_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGEWPENNTSAGVASSATDIKGKYVKEVKVENGVVTATMASSNVNKEI
KDKRLSLWAKRENGSVKWFCGQPVTRGAKDDDAVTADGANGTKIETKHLPSTCRDTSSAGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=937063 V5G01_RS10810 WP_353428678.1 2055817..2056242(-) (pilE) [Neisseria gonorrhoeae strain WHO_D_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCGAATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCTCCGCCACCGACATCAAAG
GCAAATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAATC
AAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGG
CGCCAAAGACGACGACGCCGTCACCGCCGACGGCGCCAACGGCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCC
GTGATACGTCATCTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

73.381

98.582

0.723
  pilE Neisseria gonorrhoeae strain FA1090

69.286

99.291

0.688