Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   V5G01_RS10795 Genome accession   NZ_CP145083
Coordinates   2052976..2054229 (+) Length   417 a.a.
NCBI ID   WP_003696286.1    Uniprot ID   A0AB74ETB0
Organism   Neisseria gonorrhoeae strain WHO_D_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2047976..2059229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G01_RS10775 (V5G01_10820) - 2048722..2049723 (+) 1002 WP_003686999.1 thiamine ABC transporter substrate-binding protein -
  V5G01_RS10780 (V5G01_10825) - 2049817..2050665 (+) 849 WP_003687000.1 mechanosensitive ion channel family protein -
  V5G01_RS10785 (V5G01_10830) - 2050693..2051178 (+) 486 WP_003687001.1 CinA family protein -
  V5G01_RS10790 (V5G01_10835) msrAB 2051262..2052830 (-) 1569 WP_003687002.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  V5G01_RS10795 (V5G01_10840) pilA 2052976..2054229 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  V5G01_RS10800 (V5G01_10845) - 2054344..2054484 (-) 141 WP_154274761.1 hypothetical protein -
  V5G01_RS10805 (V5G01_10850) - 2054498..2055262 (-) 765 Protein_2089 opacity family porin -
  V5G01_RS10810 (V5G01_10855) pilE 2055817..2056242 (-) 426 WP_353428678.1 pilin Machinery gene
  V5G01_RS10815 (V5G01_10860) lpxC 2056348..2057271 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G01_RS10820 (V5G01_10865) pilE 2057802..2058227 (-) 426 WP_353428679.1 pilin Machinery gene
  V5G01_RS10825 (V5G01_10870) - 2058323..2058739 (-) 417 Protein_2093 pilin -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 44331.70 Da        Isoelectric Point: 4.8647

>NTDB_id=937062 V5G01_RS10795 WP_003696286.1 2052976..2054229(+) (pilA) [Neisseria gonorrhoeae strain WHO_D_2024]
MFSFFRRKKKQETPALEEAQVQETAAKVESEVAQIVGNIKEDVESLAESVKGRAESAVETVSGAVEQVKETVAEMPSEAG
EAAERVESAKEAVAETVGEAVGQVQEAVATTEEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLIT
GDMGMEATEYLMKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKY
FQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEI
KKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGI
DDLRPFDARAFVDALLD

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=937062 V5G01_RS10795 WP_003696286.1 2052976..2054229(+) (pilA) [Neisseria gonorrhoeae strain WHO_D_2024]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACGCCGGCTCTCGAGGAGGCCCAAGTTCAGGAAACCGCAGCAAA
AGTAGAATCTGAAGTTGCTCAAATAGTTGGAAATATTAAAGAAGATGTCGAATCTTTAGCAGAAAGCGTCAAAGGGCGGG
CCGAATCTGCCGTTGAAACCGTCAGCGGTGCGGTTGAACAGGTAAAGGAAACCGTTGCCGAGATGCCGTCTGAAGCAGGG
GAAGCGGCGGAACGCGTTGAATCCGCAAAAGAAGCTGTTGCCGAAACCGTCGGCGAGGCTGTCGGGCAAGTTCAAGAAGC
CGTTGCGACAACTGAAGAACACAAGCTCGGTTGGGCTGCGCGTTTGAAACAAGGCTTGGCCAAATCACGCGACAAAATGG
CGAAATCGCTGGCCGGCGTGTTCGGCGGCGGACAAATCGGCGAGGATTTGTACGAAGAGCTGGAAACCGTGCTGATTACC
GGCGATATGGGCATGGAGGCCACCGAATACCTGATGAAAGACGTGCGCGGCCGCGTCAGCCTCAAAGGGCTGAAAGACGG
CAACGAATTGCGCGGCGCGTTGAAAGAAGCCTTGTACGACCTGATTAAGCCGTTGGAAAAACCGCTGGTCTTGCCCGAAA
CTAAAGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGCGCGGGCAAAACCACGTCTATCGGCAAACTCGCCAAATAT
TTCCAAGCGCAGGGCAAATCCGTATTGCTGGCGGCGGGCGATACCTTCCGCGCCGCCGCCCGTGAGCAGCTTCAGGCTTG
GGGCGGGCGCAACAATGTAACCGTCATTTCACAAACCACGGGCGATTCCGCCGCCGTGTGCTTCGATGCCGTCCAAGCCG
CCAAAGCGCGCGGGATCGACATCGTGCTTGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCATTTGATGGAAGAAATC
AAAAAAGTGAAGCGCGTGCTGCAAAAAGCCATTCCCGGCGCGCCGCACGAAATTATCGTCGTACTCGATGCCAATATCGG
GCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGACGCATTGGGGCTGACGGGGCTTATCGTTACCAAACTCGACGGCA
CGGCAAAAGGCGGCATCCTCGCCGCGCTTGCTTCCGACCGCCCCGTCCCCGTCCGCTACATCGGCGTGGGCGAAGGCATA
GACGACCTGCGCCCGTTTGACGCGCGCGCGTTTGTGGACGCACTGCTGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(217-416)

SRP54-type protein, helical bundle domain (SRP54_N)

(132-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

100

100

1