Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G01_RS10820 Genome accession   NZ_CP145083
Coordinates   2057802..2058227 (-) Length   141 a.a.
NCBI ID   WP_353428679.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_D_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2059199..2060143 2057802..2058227 flank 972


Gene organization within MGE regions


Location: 2057802..2060143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G01_RS10820 (V5G01_10865) pilE 2057802..2058227 (-) 426 WP_353428679.1 pilin Machinery gene
  V5G01_RS10825 (V5G01_10870) - 2058323..2058739 (-) 417 Protein_2093 pilin -
  V5G01_RS10830 (V5G01_10875) - 2059199..2060143 (-) 945 WP_003689774.1 IS110-like element ISNgo3 family transposase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15143.90 Da        Isoelectric Point: 7.8488

>NTDB_id=937064 V5G01_RS10820 WP_353428679.1 2057802..2058227(-) (pilE) [Neisseria gonorrhoeae strain WHO_D_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGIWPENNASAGVASPPSDIKGKYVKSVTVAKGVVTAQMASTGVNKEI
QGKRLSLWAKRQDGSVKWFCGQPVTRDKADDPNDAVKDDAADKIDTKHLPSTCRDTSSAGK

Nucleotide


Download         Length: 426 bp        

>NTDB_id=937064 V5G01_RS10820 WP_353428679.1 2057802..2058227(-) (pilE) [Neisseria gonorrhoeae strain WHO_D_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCATATGGCCGGAAAACAACGCTTCTGCCGGCGTGGCATCCCCCCCCTCCGACATCAAAG
GCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAAATC
CAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CAAAGCCGACGACCCCAACGACGCCGTCAAAGACGACGCCGCCGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCC
GCGACACTTCATCTGCCGGTAAGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

74.286

99.291

0.738
  pilE Neisseria gonorrhoeae MS11

69.444

100

0.709