Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   V5G01_RS02335 Genome accession   NZ_CP145083
Coordinates   451522..451995 (+) Length   157 a.a.
NCBI ID   WP_025455870.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_D_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446522..456995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G01_RS02310 (V5G01_02315) dnaB 447126..448532 (+) 1407 WP_003687911.1 replicative DNA helicase -
  V5G01_RS02315 (V5G01_02320) pilH 448687..449349 (+) 663 WP_353428687.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G01_RS02320 (V5G01_02325) pilV 449381..449989 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  V5G01_RS02325 (V5G01_02330) pilJ 449986..450930 (+) 945 WP_048339587.1 PilW family protein Machinery gene
  V5G01_RS02330 (V5G01_02335) pilK 450909..451520 (+) 612 WP_353425736.1 pilus assembly protein Machinery gene
  V5G01_RS02335 (V5G01_02340) pilL 451522..451995 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  V5G01_RS02340 (V5G01_02345) - 452065..452373 (-) 309 WP_010951048.1 AzlD family protein -
  V5G01_RS02345 (V5G01_02350) - 452370..453077 (-) 708 Protein_457 AzlC family ABC transporter permease -
  V5G01_RS02350 (V5G01_02355) dut 453243..453695 (+) 453 WP_003687923.1 dUTP diphosphatase -
  V5G01_RS02355 (V5G01_02360) dapC 453773..454960 (+) 1188 WP_003687924.1 succinyldiaminopimelate transaminase -
  V5G01_RS02360 (V5G01_02365) yaaA 455271..456050 (+) 780 WP_003694987.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17555.36 Da        Isoelectric Point: 9.4067

>NTDB_id=937034 V5G01_RS02335 WP_025455870.1 451522..451995(+) (pilL) [Neisseria gonorrhoeae strain WHO_D_2024]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=937034 V5G01_RS02335 WP_025455870.1 451522..451995(+) (pilL) [Neisseria gonorrhoeae strain WHO_D_2024]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

100

100

1
  pilX Neisseria meningitidis 8013

85.987

100

0.86