Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G01_RS02330 Genome accession   NZ_CP145083
Coordinates   450909..451520 (+) Length   203 a.a.
NCBI ID   WP_353425736.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_D_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445909..456520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G01_RS02305 (V5G01_02310) - 446381..446962 (-) 582 WP_003687910.1 superoxide dismutase -
  V5G01_RS02310 (V5G01_02315) dnaB 447126..448532 (+) 1407 WP_003687911.1 replicative DNA helicase -
  V5G01_RS02315 (V5G01_02320) pilH 448687..449349 (+) 663 WP_353428687.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G01_RS02320 (V5G01_02325) pilV 449381..449989 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  V5G01_RS02325 (V5G01_02330) pilJ 449986..450930 (+) 945 WP_048339587.1 PilW family protein Machinery gene
  V5G01_RS02330 (V5G01_02335) pilK 450909..451520 (+) 612 WP_353425736.1 pilus assembly protein Machinery gene
  V5G01_RS02335 (V5G01_02340) pilL 451522..451995 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  V5G01_RS02340 (V5G01_02345) - 452065..452373 (-) 309 WP_010951048.1 AzlD family protein -
  V5G01_RS02345 (V5G01_02350) - 452370..453077 (-) 708 Protein_457 AzlC family ABC transporter permease -
  V5G01_RS02350 (V5G01_02355) dut 453243..453695 (+) 453 WP_003687923.1 dUTP diphosphatase -
  V5G01_RS02355 (V5G01_02360) dapC 453773..454960 (+) 1188 WP_003687924.1 succinyldiaminopimelate transaminase -
  V5G01_RS02360 (V5G01_02365) yaaA 455271..456050 (+) 780 WP_003694987.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22184.01 Da        Isoelectric Point: 5.3780

>NTDB_id=937033 V5G01_RS02330 WP_353425736.1 450909..451520(+) (pilK) [Neisseria gonorrhoeae strain WHO_D_2024]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=937033 V5G01_RS02330 WP_353425736.1 450909..451520(+) (pilK) [Neisseria gonorrhoeae strain WHO_D_2024]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
TATGATAGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

99.015

100

0.99