Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V5G01_RS02315 Genome accession   NZ_CP145083
Coordinates   448687..449349 (+) Length   220 a.a.
NCBI ID   WP_353428687.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_D_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443687..454349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G01_RS02290 (V5G01_02295) cysT 443962..444798 (-) 837 WP_003687907.1 sulfate ABC transporter permease subunit CysT -
  V5G01_RS02295 (V5G01_02300) - 444979..445311 (+) 333 WP_003687908.1 hypothetical protein -
  V5G01_RS02300 (V5G01_02305) - 445642..446151 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G01_RS02305 (V5G01_02310) - 446381..446962 (-) 582 WP_003687910.1 superoxide dismutase -
  V5G01_RS02310 (V5G01_02315) dnaB 447126..448532 (+) 1407 WP_003687911.1 replicative DNA helicase -
  V5G01_RS02315 (V5G01_02320) pilH 448687..449349 (+) 663 WP_353428687.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G01_RS02320 (V5G01_02325) pilV 449381..449989 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  V5G01_RS02325 (V5G01_02330) pilJ 449986..450930 (+) 945 WP_048339587.1 PilW family protein Machinery gene
  V5G01_RS02330 (V5G01_02335) pilK 450909..451520 (+) 612 WP_353425736.1 pilus assembly protein Machinery gene
  V5G01_RS02335 (V5G01_02340) pilL 451522..451995 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  V5G01_RS02340 (V5G01_02345) - 452065..452373 (-) 309 WP_010951048.1 AzlD family protein -
  V5G01_RS02345 (V5G01_02350) - 452370..453077 (-) 708 Protein_457 AzlC family ABC transporter permease -
  V5G01_RS02350 (V5G01_02355) dut 453243..453695 (+) 453 WP_003687923.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24388.81 Da        Isoelectric Point: 9.4159

>NTDB_id=937030 V5G01_RS02315 WP_353428687.1 448687..449349(+) (pilH) [Neisseria gonorrhoeae strain WHO_D_2024]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGRGMLAFGDKNGNKAYDNDTVDVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=937030 V5G01_RS02315 WP_353428687.1 448687..449349(+) (pilH) [Neisseria gonorrhoeae strain WHO_D_2024]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACAATGA
TACGGTAGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCCTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

99.545

100

0.995