Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   D712_RS06450 Genome accession   NZ_CP168754
Coordinates   1319171..1320322 (+) Length   383 a.a.
NCBI ID   WP_000020347.1    Uniprot ID   -
Organism   Staphylococcus aureus strain D712     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1314171..1325322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D712_RS06425 (D712_006425) yfmH 1315002..1316288 (+) 1287 WP_000664775.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  D712_RS06430 (D712_006430) ymfI 1316288..1316992 (+) 705 WP_000646228.1 elongation factor P 5-aminopentanone reductase -
  D712_RS06435 (D712_006435) - 1317097..1317924 (+) 828 WP_000214890.1 YmfK family protein -
  D712_RS06440 (D712_006440) - 1317943..1318335 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  D712_RS06445 (D712_006445) pgsA 1318369..1318947 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D712_RS06450 (D712_006450) cinA 1319171..1320322 (+) 1152 WP_000020347.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  D712_RS06455 (D712_006455) recA 1320487..1321530 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  D712_RS06460 (D712_006460) rny 1321884..1323443 (+) 1560 WP_001050913.1 ribonuclease Y -
  D712_RS06465 (D712_006465) - 1323740..1323955 (-) 216 WP_000026308.1 hypothetical protein -
  D712_RS06470 (D712_006470) - 1324129..1324926 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43265.58 Da        Isoelectric Point: 6.1914

>NTDB_id=937030 D712_RS06450 WP_000020347.1 1319171..1320322(+) (cinA) [Staphylococcus aureus strain D712]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYVLIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=937030 D712_RS06450 WP_000020347.1 1319171..1320322(+) (cinA) [Staphylococcus aureus strain D712]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGTGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433