Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   R8891_RS07100 Genome accession   NZ_AP028367
Coordinates   1382753..1383760 (+) Length   335 a.a.
NCBI ID   WP_002859650.1    Uniprot ID   Q5HT48
Organism   Campylobacter jejuni strain BCH-10642     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1377753..1388760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8891_RS07085 - 1379414..1381662 (-) 2249 Protein_1378 autotransporter outer membrane beta-barrel domain-containing protein -
  R8891_RS07095 (B10642_14060) - 1382252..1382662 (-) 411 WP_002783915.1 hypothetical protein -
  R8891_RS07100 (B10642_14070) ruvB 1382753..1383760 (+) 1008 WP_002859650.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R8891_RS07105 (B10642_14080) amaA 1383764..1384807 (+) 1044 WP_002909656.1 AI-2E family transporter -
  R8891_RS07110 (B10642_14090) fumC 1384837..1386228 (-) 1392 WP_002859652.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37295.85 Da        Isoelectric Point: 4.9081

>NTDB_id=93650 R8891_RS07100 WP_002859650.1 1382753..1383760(+) (ruvB) [Campylobacter jejuni strain BCH-10642]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=93650 R8891_RS07100 WP_002859650.1 1382753..1383760(+) (ruvB) [Campylobacter jejuni strain BCH-10642]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTATGAAACTTCATTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGGGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGGGATATACT
TTTTATTGATGAAATTCATCGCTTAAGCCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGAGCTACAACGCGT
GCAGGTATGCTTAGTAATCCTTTGCGAGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
TCTCATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCTAGAATAGCTCTAAGGCTTTTAAAAAGGGTAAGAGATTTTGCTGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGGGCTAATGAGGCCTTAAATTCTTTAGGAGTGAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACTGCTGCTAAACAAAAACCTATCGGACTTGCAAGCATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HT48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.461

99.701

0.693
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.761

97.313

0.513
  ruvB Streptococcus pneumoniae TIGR4

48.632

98.209

0.478
  ruvB Streptococcus pneumoniae R6

48.632

98.209

0.478
  ruvB Streptococcus pneumoniae D39

48.632

98.209

0.478
  ruvB Synechocystis sp. PCC 6803

49.533

95.821

0.475

Multiple sequence alignment