Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F92_RS09425 Genome accession   NZ_CP145050
Coordinates   1794718..1795131 (+) Length   137 a.a.
NCBI ID   WP_047918892.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_H_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1789718..1800131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F92_RS09395 (V5F92_09405) - 1790109..1790504 (+) 396 Protein_1828 pilin -
  V5F92_RS09400 (V5F92_09410) - 1790550..1790840 (+) 291 Protein_1829 pilin -
  V5F92_RS09405 (V5F92_09415) - 1791300..1791695 (+) 396 Protein_1830 pilin -
  V5F92_RS09410 (V5F92_09420) - 1792234..1792683 (+) 450 Protein_1831 pilin -
  V5F92_RS09415 (V5F92_09425) pilE 1792779..1793195 (+) 417 WP_147616627.1 pilin Machinery gene
  V5F92_RS09420 (V5F92_09430) lpxC 1793689..1794612 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F92_RS09425 (V5F92_09435) pilE 1794718..1795131 (+) 414 WP_047918892.1 pilin Machinery gene
  V5F92_RS09430 (V5F92_09440) - 1796111..1796622 (+) 512 Protein_1835 pilin -
  V5F92_RS09435 (V5F92_09445) - 1797116..1797943 (+) 828 WP_082298602.1 opacity family porin -
  V5F92_RS09440 (V5F92_09450) - 1797957..1798127 (+) 171 WP_169301565.1 hypothetical protein -
  V5F92_RS09445 (V5F92_09455) pilA 1798212..1799465 (-) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15084.84 Da        Isoelectric Point: 8.4814

>NTDB_id=936476 V5F92_RS09425 WP_047918892.1 1794718..1795131(+) (pilE) [Neisseria gonorrhoeae strain WHO_H_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNGAAGVASASEIKGKYVQKVEVKKGVVTAQMASTGVNKEIQ
DKRLSLWAKRENGSVKWFCGQPVKRNANNNDTVAADKDKEIDTKHLPSTCRDKHSDT

Nucleotide


Download         Length: 414 bp        

>NTDB_id=936476 V5F92_RS09425 WP_047918892.1 1794718..1795131(+) (pilE) [Neisseria gonorrhoeae strain WHO_H_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGCCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGGCGCTGCCGGCGTGGCATCCGCTTCAGAAATCAAAGGCA
AATATGTTCAGAAAGTTGAAGTCAAAAAAGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCAACGC
CAACAACAACGACACCGTTGCCGCCGACAAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCCGTGATAAAC
ACTCTGACACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.087

100

0.766
  pilE Neisseria gonorrhoeae MS11

71.223

100

0.723