Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F92_RS09415 Genome accession   NZ_CP145050
Coordinates   1792779..1793195 (+) Length   138 a.a.
NCBI ID   WP_147616627.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_H_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1787779..1798195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F92_RS09380 (V5F92_09390) - 1787944..1788564 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  V5F92_RS09385 (V5F92_09395) - 1788763..1789139 (-) 377 Protein_1826 transposase -
  V5F92_RS09390 (V5F92_09400) - 1789448..1789573 (-) 126 Protein_1827 IS110 family transposase -
  V5F92_RS09395 (V5F92_09405) - 1790109..1790504 (+) 396 Protein_1828 pilin -
  V5F92_RS09400 (V5F92_09410) - 1790550..1790840 (+) 291 Protein_1829 pilin -
  V5F92_RS09405 (V5F92_09415) - 1791300..1791695 (+) 396 Protein_1830 pilin -
  V5F92_RS09410 (V5F92_09420) - 1792234..1792683 (+) 450 Protein_1831 pilin -
  V5F92_RS09415 (V5F92_09425) pilE 1792779..1793195 (+) 417 WP_147616627.1 pilin Machinery gene
  V5F92_RS09420 (V5F92_09430) lpxC 1793689..1794612 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F92_RS09425 (V5F92_09435) pilE 1794718..1795131 (+) 414 WP_047918892.1 pilin Machinery gene
  V5F92_RS09430 (V5F92_09440) - 1796111..1796622 (+) 512 Protein_1835 pilin -
  V5F92_RS09435 (V5F92_09445) - 1797116..1797943 (+) 828 WP_082298602.1 opacity family porin -
  V5F92_RS09440 (V5F92_09450) - 1797957..1798127 (+) 171 WP_169301565.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14825.45 Da        Isoelectric Point: 5.7750

>NTDB_id=936475 V5F92_RS09415 WP_147616627.1 1792779..1793195(+) (pilE) [Neisseria gonorrhoeae strain WHO_H_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPENNTSAGVASPADIKGKYVESVTVANGVVTAQMKPSGVNNEIQ
GKRLSLWGRRENGSVKWFCGQPVQRGAGAGADAVTADKDKEIETKHLPSTCRDEPTAE

Nucleotide


Download         Length: 417 bp        

>NTDB_id=936475 V5F92_RS09415 WP_147616627.1 1792779..1793195(+) (pilE) [Neisseria gonorrhoeae strain WHO_H_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCCCCGCCGACATCAAAGGCA
AATATGTTGAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCCAAATGAAACCAAGCGGCGTAAACAATGAAATCCAA
GGCAAAAGACTATCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCGGCGC
CGGCGCCGGCGCCGACGCCGTCACCGCCGACAAAGACAAAGAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATG
AACCAACTGCCGAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

73.381

100

0.739
  pilE Neisseria gonorrhoeae strain FA1090

66.667

100

0.667