Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACEPWM_RS01540 Genome accession   NZ_CP168642
Coordinates   351276..351779 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A0D1JHQ1
Organism   Staphylococcus aureus strain NCCP11854     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 346276..356779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPWM_RS01510 (ACEPWM_01510) - 346921..347124 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  ACEPWM_RS01515 (ACEPWM_01515) ychF 347136..348233 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  ACEPWM_RS01520 (ACEPWM_01520) istA 348449..349741 (+) 1293 WP_000777467.1 IS21 family transposase -
  ACEPWM_RS01525 (ACEPWM_01525) istB 349734..350495 (+) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  ACEPWM_RS01530 (ACEPWM_01530) - 350551..350715 (-) 165 WP_001052486.1 hypothetical protein -
  ACEPWM_RS01535 (ACEPWM_01535) rpsF 350959..351255 (+) 297 WP_235103102.1 30S ribosomal protein S6 -
  ACEPWM_RS01540 (ACEPWM_01540) ssbA 351276..351779 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  ACEPWM_RS01545 (ACEPWM_01545) rpsR 351831..352073 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  ACEPWM_RS01550 (ACEPWM_01550) - 352339..353277 (-) 939 WP_078055966.1 Abi family protein -
  ACEPWM_RS01555 (ACEPWM_01555) - 353316..354031 (-) 716 Protein_308 tyrosine-type recombinase/integrase -
  ACEPWM_RS01560 (ACEPWM_01560) selX 354237..354848 (+) 612 WP_000473142.1 staphylococcal enterotoxin-like toxin X -
  ACEPWM_RS01565 (ACEPWM_01565) - 355217..355585 (+) 369 WP_000849172.1 YxeA family protein -
  ACEPWM_RS01570 (ACEPWM_01570) - 355766..356338 (+) 573 WP_000769719.1 PepSY domain-containing protein -
  ACEPWM_RS01575 (ACEPWM_01575) - 356476..356739 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=936323 ACEPWM_RS01540 WP_000934799.1 351276..351779(+) (ssbA) [Staphylococcus aureus strain NCCP11854]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=936323 ACEPWM_RS01540 WP_000934799.1 351276..351779(+) (ssbA) [Staphylococcus aureus strain NCCP11854]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAACAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5XGT
  PDB 7YM1
  PDB 8GW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365