Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACEPOT_RS04670 Genome accession   NZ_CP168499
Coordinates   979974..980477 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A0D1JHQ1
Organism   Staphylococcus aureus strain J2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 974974..985477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPOT_RS04640 (ACEPOT_04640) spo0J 975911..976756 (+) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein Regulator
  ACEPOT_RS04645 (ACEPOT_04645) - 976913..977794 (+) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  ACEPOT_RS04650 (ACEPOT_04650) - 977824..978027 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  ACEPOT_RS04655 (ACEPOT_04655) ychF 978039..979136 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  ACEPOT_RS04660 (ACEPOT_04660) - 979222..979413 (-) 192 WP_001052483.1 hypothetical protein -
  ACEPOT_RS04665 (ACEPOT_04665) rpsF 979657..979953 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  ACEPOT_RS04670 (ACEPOT_04670) ssbA 979974..980477 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  ACEPOT_RS04675 (ACEPOT_04675) rpsR 980529..980771 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  ACEPOT_RS04680 (ACEPOT_04680) - 981037..981975 (-) 939 WP_072419886.1 Abi family protein -
  ACEPOT_RS04685 (ACEPOT_04685) - 982026..982728 (-) 703 Protein_925 tyrosine-type recombinase/integrase -
  ACEPOT_RS04690 (ACEPOT_04690) - 982934..983545 (+) 612 WP_000473942.1 exotoxin beta-grasp domain-containing protein -
  ACEPOT_RS04695 (ACEPOT_04695) - 983914..984286 (+) 373 Protein_927 YxeA family protein -
  ACEPOT_RS04700 (ACEPOT_04700) - 984463..985035 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  ACEPOT_RS04705 (ACEPOT_04705) - 985173..985436 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=936241 ACEPOT_RS04670 WP_000934799.1 979974..980477(+) (ssbA) [Staphylococcus aureus strain J2]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=936241 ACEPOT_RS04670 WP_000934799.1 979974..980477(+) (ssbA) [Staphylococcus aureus strain J2]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5XGT
  PDB 7YM1
  PDB 8GW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365