Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G02_RS09065 Genome accession   NZ_CP145026
Coordinates   1736076..1736504 (+) Length   142 a.a.
NCBI ID   WP_050154588.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S2_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1731076..1741504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G02_RS09030 (V5G02_09040) - 1731289..1731909 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  V5G02_RS09035 (V5G02_09045) - 1732108..1732485 (-) 378 WP_010361697.1 IS1595 family transposase -
  V5G02_RS09040 (V5G02_09050) - 1732794..1732919 (-) 126 Protein_1757 IS110 family transposase -
  V5G02_RS09045 (V5G02_09055) - 1733465..1733869 (+) 405 Protein_1758 pilin -
  V5G02_RS09050 (V5G02_09060) - 1733987..1734373 (+) 387 Protein_1759 pilin -
  V5G02_RS09055 (V5G02_09065) - 1734491..1734571 (+) 81 Protein_1760 pilin -
  V5G02_RS09060 (V5G02_09075) lpxC 1735047..1735970 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G02_RS09065 (V5G02_09080) pilE 1736076..1736504 (+) 429 WP_050154588.1 pilin Machinery gene
  V5G02_RS09070 (V5G02_09085) - 1737048..1737833 (+) 786 WP_353074685.1 opacity family porin -
  V5G02_RS09075 (V5G02_09090) pilA 1738103..1739356 (-) 1254 WP_047919725.1 signal recognition particle-docking protein FtsY Machinery gene
  V5G02_RS09080 (V5G02_09095) msrAB 1739502..1741070 (+) 1569 WP_003696503.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15102.86 Da        Isoelectric Point: 9.0315

>NTDB_id=936090 V5G02_RS09065 WP_050154588.1 1736076..1736504(+) (pilE) [Neisseria gonorrhoeae strain WHO_S2_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGKWPADNGAAGVASSDKIKGKYVQKVEVAKGVVTAQMASTGVNKEIQ
GKKLSLWAKRQAGSVKWFCGQPVTRNDAKDDTVTAAAGNGGKNNAIDTKHLPSTCRDEHDAT

Nucleotide


Download         Length: 429 bp        

>NTDB_id=936090 V5G02_RS09065 WP_050154588.1 1736076..1736504(+) (pilE) [Neisseria gonorrhoeae strain WHO_S2_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCAAATGGCCCGCCGACAACGGCGCTGCCGGCGTGGCATCCTCCGACAAAATCAAAGGCA
AATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAACGA
CGCCAAAGACGACACCGTCACCGCCGCCGCCGGCAACGGCGGCAAAAACAACGCCATCGACACCAAGCACCTGCCGTCAA
CCTGCCGCGATGAACATGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75.524

100

0.761
  pilE Neisseria gonorrhoeae MS11

67.143

98.592

0.662