Detailed information NTG0093604

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: R8954_RS07260
• Genome accession: NZ_AP028365
• Coordinates: 1376935..1377942 (+)
• Length: 335 a.a.
• NCBI ID: WP_002859650.1
• Uniprot ID: Q5HT48
• Organism: Campylobacter jejuni strain BCH-10632
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1371935..1382942

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8954_RS07235 (B10632_14250)	-	1373594..1374544 (-)	951	WP_317726040.1	autotransporter outer membrane beta-barrel domain-containing protein	-
R8954_RS07240 (B10632_14270)	-	1374734..1375435 (-)	702	WP_002902430.1	hypothetical protein	-
R8954_RS07245 (B10632_14280)	-	1375404..1375871 (-)	468	WP_317726042.1	C4-dicarboxylate ABC transporter	-
R8954_RS07255 (B10632_14290)	-	1376434..1376844 (-)	411	WP_002783915.1	hypothetical protein	-
R8954_RS07260 (B10632_14300)	ruvB	1376935..1377942 (+)	1008	WP_002859650.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
R8954_RS07265 (B10632_14310)	amaA	1377946..1378989 (+)	1044	WP_002859651.1	AI-2E family transporter	-
R8954_RS07270 (B10632_14320)	fumC	1379019..1380410 (-)	1392	WP_002859652.1	class II fumarate hydratase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37295.85 Da
• Isoelectric Point: 4.9081

>NTDB_id=93604 R8954_RS07260 WP_002859650.1 1376935..1377942(+) (ruvB) [Campylobacter jejuni strain BCH-10632]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide

• Length: 1008 bp

>NTDB_id=93604 R8954_RS07260 WP_002859650.1 1376935..1377942(+) (ruvB) [Campylobacter jejuni strain BCH-10632]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTATGAAACTTCATTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGGGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGGGATATACT
TTTTATTGATGAAATTCATCGCTTAAGCCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGAGCTACAACGCGT
GCAGGTATGCTTAGTAATCCTTTGCGAGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
TCTCATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCTAGAATAGCTCTAAGGCTTTTAAAAAGGGTAAGAGATTTTGCTGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGGGCTAATGAGGCCTTAAATTCTTTAGGAGTGAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCCAAACAAAAACCTATCGGACTTGCAAGCATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (255-325)

3D structure

• AlphaFold DB: Q5HT48

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	69.461	99.701	0.693
ruvB	Bacillus subtilis subsp. subtilis str. 168	52.761	97.313	0.513
ruvB	Streptococcus pneumoniae TIGR4	48.632	98.209	0.478
ruvB	Streptococcus pneumoniae R6	48.632	98.209	0.478
ruvB	Streptococcus pneumoniae D39	48.632	98.209	0.478
ruvB	Synechocystis sp. PCC 6803	49.533	95.821	0.475