Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V5F89_RS00635 Genome accession   NZ_CP144918
Coordinates   131832..132362 (-) Length   176 a.a.
NCBI ID   WP_338446337.1    Uniprot ID   -
Organism   Pelagerythrobacter marensis strain kcgeb_sd     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 126832..137362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F89_RS00605 (V5F89_00605) - 127639..128067 (-) 429 WP_338446332.1 GFA family protein -
  V5F89_RS00610 (V5F89_00610) hslU 128086..129387 (-) 1302 WP_338447474.1 ATP-dependent protease ATPase subunit HslU -
  V5F89_RS00615 (V5F89_00615) hslV 129510..130070 (-) 561 WP_338446333.1 ATP-dependent protease subunit HslV -
  V5F89_RS00620 (V5F89_00620) - 130122..130592 (-) 471 WP_338446334.1 outer membrane protein assembly factor BamE -
  V5F89_RS00625 (V5F89_00625) - 130760..131278 (+) 519 WP_338446335.1 ubiquinol-cytochrome C chaperone family protein -
  V5F89_RS00630 (V5F89_00630) - 131275..131793 (+) 519 WP_338446336.1 DUF177 domain-containing protein -
  V5F89_RS00635 (V5F89_00635) ssb 131832..132362 (-) 531 WP_338446337.1 single-stranded DNA-binding protein Machinery gene
  V5F89_RS00640 (V5F89_00640) - 132469..132933 (-) 465 WP_338446338.1 Rrf2 family transcriptional regulator -
  V5F89_RS00645 (V5F89_00645) - 133059..133469 (-) 411 WP_338446339.1 nuclear transport factor 2 family protein -
  V5F89_RS00650 (V5F89_00650) ndk 133619..134041 (-) 423 WP_338446340.1 nucleoside-diphosphate kinase -
  V5F89_RS00655 (V5F89_00655) - 134148..134645 (-) 498 WP_338446341.1 hypothetical protein -
  V5F89_RS00660 (V5F89_00660) - 134699..135142 (-) 444 WP_338446342.1 DNA polymerase III subunit chi -
  V5F89_RS00665 (V5F89_00665) - 135153..136610 (-) 1458 WP_338446343.1 leucyl aminopeptidase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18312.86 Da        Isoelectric Point: 4.7789

>NTDB_id=935157 V5F89_RS00635 WP_338446337.1 131832..132362(-) (ssb) [Pelagerythrobacter marensis strain kcgeb_sd]
MAGSLNKVMLIGNLGADPEVREFQNGGAVCNLRIATSEQWKDRNTGERQERTEWHSVAIFSEGLINVAKNYLRKGSKVYI
EGQLQTRKWQDQNGQDRYSTEIVLRGFNGTLTMLDGAPGGGQRGGGGSWDRGGSDGGPGGGSGGGWNQGGGGSGSGGGAA
SGGGANYDDLDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=935157 V5F89_RS00635 WP_338446337.1 131832..132362(-) (ssb) [Pelagerythrobacter marensis strain kcgeb_sd]
ATGGCGGGCAGCCTCAACAAAGTCATGCTGATCGGCAACCTTGGCGCCGATCCCGAAGTGCGCGAATTTCAGAACGGCGG
CGCGGTCTGCAACTTGCGCATCGCCACCAGCGAGCAGTGGAAGGACCGCAACACCGGCGAGCGCCAGGAGCGGACCGAGT
GGCACAGCGTCGCGATCTTTTCCGAAGGGTTGATCAACGTCGCGAAAAACTATCTGCGCAAGGGATCGAAGGTCTATATC
GAAGGCCAGCTCCAGACCCGCAAATGGCAGGACCAGAACGGGCAGGACCGCTATTCGACCGAGATCGTGCTGCGCGGTTT
CAACGGAACGCTGACGATGCTCGATGGCGCCCCCGGCGGCGGTCAGCGCGGCGGTGGCGGAAGCTGGGATCGTGGCGGAT
CGGATGGCGGCCCTGGCGGCGGAAGCGGCGGCGGCTGGAACCAGGGCGGCGGCGGATCGGGATCGGGCGGCGGTGCCGCT
TCCGGCGGCGGCGCGAATTACGACGATCTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.724

100

0.511
  ssb Glaesserella parasuis strain SC1401

47.312

100

0.5
  ssb Neisseria gonorrhoeae MS11

40.659

100

0.42
  ssb Neisseria meningitidis MC58

39.56

100

0.409