Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V4941_RS11060 Genome accession   NZ_CP144736
Coordinates   2506390..2506893 (-) Length   167 a.a.
NCBI ID   WP_012699330.1    Uniprot ID   -
Organism   Azotobacter vinelandii DJ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2501390..2511893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4941_RS11035 (V4941_11025) - 2501441..2502115 (+) 675 WP_012699335.1 OmpW family outer membrane protein -
  V4941_RS11040 (V4941_11030) - 2502253..2503191 (-) 939 WP_012699334.1 NAD-dependent epimerase/dehydratase family protein -
  V4941_RS11045 (V4941_11035) - 2503184..2504068 (-) 885 WP_041806899.1 sugar nucleotide-binding protein -
  V4941_RS11050 (V4941_11040) - 2504550..2505287 (-) 738 WP_012699332.1 SDR family oxidoreductase -
  V4941_RS11055 (V4941_11045) - 2505419..2506318 (+) 900 WP_012699331.1 LysR family transcriptional regulator -
  V4941_RS11060 (V4941_11050) ssb 2506390..2506893 (-) 504 WP_012699330.1 single-stranded DNA-binding protein Machinery gene
  V4941_RS11065 (V4941_11055) - 2506903..2508291 (-) 1389 WP_012699329.1 MFS transporter -
  V4941_RS11070 (V4941_11060) uvrA 2508424..2511258 (+) 2835 WP_012699328.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18657.61 Da        Isoelectric Point: 5.2852

>NTDB_id=934688 V4941_RS11060 WP_012699330.1 2506390..2506893(-) (ssb) [Azotobacter vinelandii DJ]
MARGVNKVILIGNVGGDPETRYLPNGNAVTNITLATTDSWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQCYVE
GRLQTRKWQGQDGQDRYTTEIVVDMNGTLQLLGGRAGNPDDAPRAPRPPREPQQQAQAPQSRPAPAPQQDRQPPAPDYDS
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=934688 V4941_RS11060 WP_012699330.1 2506390..2506893(-) (ssb) [Azotobacter vinelandii DJ]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGATCGGCAACGTCGGCGGCGATCCGGAAACCCGGTACCTGCCCAACGGCAA
CGCGGTCACCAACATCACCCTGGCCACCACCGACAGTTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGTACCGAAT
GGCATCGCGTGGTGTTCTTCGGCCGGCTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGTGCTACGTCGAG
GGCCGCCTGCAGACCCGCAAGTGGCAGGGGCAGGATGGCCAGGATCGCTATACCACAGAGATCGTCGTCGACATGAACGG
CACCTTGCAACTGCTCGGCGGCCGCGCCGGCAACCCCGACGACGCACCGCGCGCGCCGCGTCCCCCGCGCGAGCCGCAGC
AGCAGGCCCAGGCTCCGCAGTCGCGCCCCGCTCCCGCTCCGCAGCAGGACCGGCAGCCGCCAGCGCCGGACTACGACAGC
TTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.091

100

0.623
  ssb Glaesserella parasuis strain SC1401

47.826

100

0.527
  ssb Neisseria gonorrhoeae MS11

42.935

100

0.473
  ssb Neisseria meningitidis MC58

44.886

100

0.473