Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VXE04_RS02010 Genome accession   NZ_CP144716
Coordinates   417306..417842 (+) Length   178 a.a.
NCBI ID   WP_029593101.1    Uniprot ID   A0A2J5PYR2
Organism   Enterobacter hormaechei strain B19446     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 412306..422842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXE04_RS01990 (VXE04_01990) - 412832..413557 (+) 726 WP_004115569.1 TIGR03761 family integrating conjugative element protein -
  VXE04_RS01995 (VXE04_01995) - 413559..414113 (+) 555 WP_029593104.1 hypothetical protein -
  VXE04_RS02000 (VXE04_02000) - 414129..416138 (+) 2010 WP_029593103.1 DNA topoisomerase III -
  VXE04_RS02005 (VXE04_02005) - 416774..417244 (+) 471 WP_029593102.1 STY4534 family ICE replication protein -
  VXE04_RS02010 (VXE04_02010) ssb 417306..417842 (+) 537 WP_029593101.1 single-stranded DNA-binding protein Machinery gene
  VXE04_RS02015 (VXE04_02015) - 417907..418149 (+) 243 WP_016807972.1 DUF4160 domain-containing protein -
  VXE04_RS02020 (VXE04_02020) - 418133..418381 (+) 249 WP_029593099.1 DUF2442 domain-containing protein -
  VXE04_RS02025 (VXE04_02025) - 418518..419183 (+) 666 WP_029593097.1 PilL N-terminal domain-containing protein -
  VXE04_RS02030 (VXE04_02030) - 419180..419938 (+) 759 WP_029593095.1 hypothetical protein -
  VXE04_RS02035 (VXE04_02035) - 419950..420672 (+) 723 WP_029593094.1 TIGR03759 family integrating conjugative element protein -
  VXE04_RS02040 (VXE04_02040) - 420651..421286 (+) 636 WP_031624646.1 transglycosylase SLT domain-containing protein -
  VXE04_RS02045 (VXE04_02045) - 421292..421825 (+) 534 WP_029593092.1 integrating conjugative element protein -
  VXE04_RS02050 (VXE04_02050) - 421825..422397 (+) 573 WP_048290043.1 restriction endonuclease -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19149.24 Da        Isoelectric Point: 6.8818

>NTDB_id=934536 VXE04_RS02010 WP_029593101.1 417306..417842(+) (ssb) [Enterobacter hormaechei strain B19446]
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQAGQDKYTTEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPHQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGFGYGVPKSAIHAL

Nucleotide


Download         Length: 537 bp        

>NTDB_id=934536 VXE04_RS02010 WP_029593101.1 417306..417842(+) (ssb) [Enterobacter hormaechei strain B19446]
ATGTCCTCACGCGGCGTTAACAAGGTTATCCTTGTCGGAAATCTCGGCCAGGATCCTGAAGTGCGTTATATTCCCAACGG
CAGTGCAGTTGCCACCCTTTCTCTGGCCACGTCTGAGAGCTGGCGCGATAAGCAGTCCGGAGAACAGAAAGAAGTGACTG
AATGGCACCGGGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGTAAAGGCTCCCAGGTTTACATC
GAGGGCCAGCTGCGCACACGCAAATGGACCGATCAGGCCGGCCAGGATAAATACACCACAGAGGTGGTGGTCAATATTGG
TGGCACCATGCAGATGCTTGGCGGCCGGCAGTCCGGCAGCGGTCAGAATACGTCTTCCCGGAATGACTGGGGCCAGCCTC
ATCAACCTTCCGGACCGACTCACAGTGGCCAGGCTTCCGGCAGCAGTGCCGGTGCGCCACCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGGAGTACCAAAATCGGCAATCCATGCACTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J5PYR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.407

99.438

0.64
  ssb Glaesserella parasuis strain SC1401

50.276

100

0.511
  ssb Neisseria gonorrhoeae MS11

43.75

98.876

0.433
  ssb Neisseria meningitidis MC58

43.75

98.876

0.433