Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NUH87_RS21625 Genome accession   NZ_CP144470
Coordinates   4741047..4742390 (-) Length   447 a.a.
NCBI ID   WP_040071066.1    Uniprot ID   A0A0C2HW98
Organism   Pseudomonas batumici strain Koz11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4736047..4747390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUH87_RS21590 (NUH87_21590) ispH 4736055..4737002 (+) 948 WP_338522603.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NUH87_RS21595 (NUH87_21595) - 4736979..4737524 (-) 546 WP_338522604.1 GspH/FimT family pseudopilin -
  NUH87_RS21600 (NUH87_21600) pilV 4737687..4738157 (+) 471 WP_338522605.1 type IV pilus modification protein PilV -
  NUH87_RS21605 (NUH87_21605) - 4738154..4738864 (+) 711 WP_338522606.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NUH87_RS21610 (NUH87_21610) - 4738960..4739457 (+) 498 WP_338522607.1 PilX N-terminal domain-containing pilus assembly protein -
  NUH87_RS21615 (NUH87_21615) - 4739470..4739883 (+) 414 WP_338522608.1 type IV pilin protein -
  NUH87_RS21620 (NUH87_21620) thiO 4739939..4741039 (+) 1101 WP_338522609.1 glycine oxidase ThiO -
  NUH87_RS21625 (NUH87_21625) pilR 4741047..4742390 (-) 1344 WP_040071066.1 sigma-54 dependent transcriptional regulator Regulator
  NUH87_RS21630 (NUH87_21630) pilS 4742393..4743982 (-) 1590 WP_338522610.1 ATP-binding protein Regulator
  NUH87_RS21635 (NUH87_21635) - 4743972..4744205 (-) 234 WP_338522611.1 PP0621 family protein -
  NUH87_RS21640 (NUH87_21640) - 4744326..4745657 (-) 1332 WP_338522612.1 IS4 family transposase -
  NUH87_RS21645 (NUH87_21645) - 4745776..4746789 (-) 1014 WP_040071063.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49585.79 Da        Isoelectric Point: 6.4111

>NTDB_id=933997 NUH87_RS21625 WP_040071066.1 4741047..4742390(-) (pilR) [Pseudomonas batumici strain Koz11]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTSSARNVAQAREKLAQESFDLCLTDMRLPDGTGLELVQHIQQRHPQVPVA
MITAYGSLDTAINALKSGAFDFLTKPVDLARLRELVSSALRLPTSGSKQPSIDSRLLGDSLPMRALRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRAERPFVPVNCGAIPAELMESEFFGHRKGSFTGAVEDKPGLFQAANGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSVGGQQEEIVDVRILCATHKDLNAEVGAGRFRQDLYYRLNVIELRVPSLRERRDDIEPLATH
VLERLASGSGLPAARLHPQALDTLKGYRFPGNVRELENMLERAYTLCENEQIEAGDLRLAEGGGSCAPVGEPSLAQIDNL
EDYLESIERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=933997 NUH87_RS21625 WP_040071066.1 4741047..4742390(-) (pilR) [Pseudomonas batumici strain Koz11]
ATGAGCCCACGGCAAAAGATCCTGATCGTCGACGATGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGGCCGGAT
GAAACTCGACACCAGCAGTGCCCGCAACGTGGCGCAGGCCCGGGAAAAGCTGGCCCAGGAAAGTTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCGGACGGTACCGGGCTTGAGCTGGTGCAGCATATCCAGCAACGCCATCCCCAGGTGCCCGTGGCG
ATGATCACCGCCTATGGCAGCCTCGACACCGCCATCAACGCCCTGAAATCCGGGGCCTTCGACTTCCTGACCAAACCGGT
GGACCTGGCGCGCCTGCGCGAACTGGTGAGCAGCGCCTTGCGCTTGCCGACCAGCGGTAGCAAGCAGCCCTCCATCGACA
GCCGGCTGCTGGGTGACTCACTGCCCATGCGCGCCCTACGCAAACAGATCGACAAACTGGCCCGCAGCCAGGCGCCGGTG
TACATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTGGCACGGCTGATCCATGAGCAGGGGCCGCGCGCCGAGCGGCC
GTTCGTACCGGTGAACTGCGGAGCCATTCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCATCGCAAAGGCAGCTTTA
CCGGCGCGGTGGAAGACAAGCCGGGGTTGTTCCAGGCGGCCAATGGCGGCACCTTGTTTCTCGATGAAGTCGCCGACCTG
CCGCTGGCGATGCAAGTCAAGCTGTTGCGCGCCATTCAGGAAAAGGCCGTGCGCAGTGTCGGCGGGCAGCAGGAGGAAAT
CGTCGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTGAACGCCGAAGTCGGTGCCGGGCGTTTTCGCCAGGACCTCT
ACTATCGCCTGAACGTCATCGAGCTGCGGGTGCCATCGTTGCGCGAGCGCCGCGACGATATCGAACCCCTGGCCACCCAC
GTTCTCGAACGACTGGCCTCCGGCAGCGGCCTACCGGCGGCGCGGCTTCATCCGCAGGCGCTGGATACGCTCAAGGGCTA
CCGCTTCCCCGGTAACGTCCGGGAATTGGAGAACATGCTCGAACGGGCGTACACCCTGTGTGAAAACGAACAGATCGAAG
CCGGCGACCTGCGCCTGGCCGAAGGTGGTGGGAGCTGCGCGCCTGTCGGGGAACCGAGCCTGGCGCAGATCGACAACCTG
GAAGATTACCTGGAGAGCATCGAGCGCAAACTCATTCTCCAGGCACTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGC
CCAGCGGTTGAACCTGTCGTTTCGTTCGATGCGCTATCGGCTCAAGAAGCTCGGGCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C2HW98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

81.532

99.329

0.81
  pilR Acinetobacter baumannii strain A118

48.584

100

0.499
  luxO Vibrio cholerae strain A1552

37.528

99.553

0.374