Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NUH87_RS21630 Genome accession   NZ_CP144470
Coordinates   4742393..4743982 (-) Length   529 a.a.
NCBI ID   WP_338522610.1    Uniprot ID   -
Organism   Pseudomonas batumici strain Koz11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4737393..4748982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUH87_RS21600 (NUH87_21600) pilV 4737687..4738157 (+) 471 WP_338522605.1 type IV pilus modification protein PilV -
  NUH87_RS21605 (NUH87_21605) - 4738154..4738864 (+) 711 WP_338522606.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NUH87_RS21610 (NUH87_21610) - 4738960..4739457 (+) 498 WP_338522607.1 PilX N-terminal domain-containing pilus assembly protein -
  NUH87_RS21615 (NUH87_21615) - 4739470..4739883 (+) 414 WP_338522608.1 type IV pilin protein -
  NUH87_RS21620 (NUH87_21620) thiO 4739939..4741039 (+) 1101 WP_338522609.1 glycine oxidase ThiO -
  NUH87_RS21625 (NUH87_21625) pilR 4741047..4742390 (-) 1344 WP_040071066.1 sigma-54 dependent transcriptional regulator Regulator
  NUH87_RS21630 (NUH87_21630) pilS 4742393..4743982 (-) 1590 WP_338522610.1 ATP-binding protein Regulator
  NUH87_RS21635 (NUH87_21635) - 4743972..4744205 (-) 234 WP_338522611.1 PP0621 family protein -
  NUH87_RS21640 (NUH87_21640) - 4744326..4745657 (-) 1332 WP_338522612.1 IS4 family transposase -
  NUH87_RS21645 (NUH87_21645) - 4745776..4746789 (-) 1014 WP_040071063.1 outer membrane protein assembly factor BamD -
  NUH87_RS21650 (NUH87_21650) rluD 4746940..4747902 (+) 963 WP_040071060.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NUH87_RS21655 (NUH87_21655) pgeF 4747899..4748624 (+) 726 WP_338522613.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58527.65 Da        Isoelectric Point: 7.0603

>NTDB_id=933998 NUH87_RS21630 WP_338522610.1 4742393..4743982(-) (pilS) [Pseudomonas batumici strain Koz11]
MSAETFSLGGSQAQRLLRLYHLYRLSIGIALVLLISSNMDDKLLELTNGELFRTGSWIYLILNILVVVLLGNPRHQGQVF
ILALADALMLSGLFYAAGGPPSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYLSFSRPAAANYYVQAGLLG
VLCFAAAVLVQGLTRLLAVSENLAEQRASDVTNLEELNALILQRMRTGILVLDEQRRVQLANQGALRLLGEQDLNGRVID
AFSLELVERLHAWQSNPTLRPKSLKILGAGPVLQPSFIALKRGEHYQILVFLEDLSQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESELMPEADRRLTQIIQDQSKRLNLVIENVLQLSRRRPTQPQLLDLNEWLQAFVGEWREHARPN
QCLHLQIDDKSLQTRADPLQLAQVLNNLLENGLRYSAQLHELAQVWLTLSEDPNNGLPTLEVLDDGPGVAPEQRQHLFEP
FFTTESKGTGLGLYLSRELCESNQARLDYSVRQGGSCFRITFAHARKLS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=933998 NUH87_RS21630 WP_338522610.1 4742393..4743982(-) (pilS) [Pseudomonas batumici strain Koz11]
GTGAGCGCTGAGACCTTCAGTCTCGGCGGTTCCCAGGCCCAGCGCCTGCTGCGGCTCTATCACCTCTATCGCCTGAGCAT
CGGCATCGCCCTGGTGCTGCTGATCTCCAGCAACATGGACGACAAGCTGCTGGAGCTGACCAACGGCGAACTGTTTCGCA
CCGGCAGCTGGATCTACCTGATCCTGAATATCCTGGTGGTGGTCCTGCTGGGAAATCCCCGGCACCAGGGCCAGGTCTTC
ATCCTGGCGCTGGCGGATGCGCTGATGTTGTCCGGCCTGTTCTATGCCGCCGGCGGTCCGCCGAGCGGCATCGGCAACCT
GTTGATCGCCTCCGTGGCCATCAGCAACGTGCTGCTGCGCGGTCGTATCGGCCTGCTGATCGCCGCCGTCTCGGCCATCG
GCATCATCTACCTGACCTTCTACCTGAGTTTCAGCCGCCCGGCCGCCGCCAACTATTACGTGCAGGCCGGCCTGCTCGGC
GTCCTCTGCTTCGCCGCCGCCGTGCTGGTACAGGGCCTGACCCGGCTGCTGGCGGTGAGCGAAAACCTCGCCGAACAACG
TGCCAGCGACGTCACCAACCTGGAAGAACTCAACGCCCTGATCCTGCAACGCATGCGTACCGGCATCCTGGTGCTCGACG
AGCAACGCCGGGTGCAGCTCGCCAATCAGGGGGCACTGAGGCTGCTGGGTGAGCAGGACCTCAATGGTCGGGTGATCGAC
GCCTTCTCCCTGGAACTGGTCGAGCGCCTGCACGCGTGGCAAAGCAACCCGACCCTTCGTCCGAAAAGCCTGAAGATCCT
CGGCGCGGGTCCCGTCCTGCAACCCAGTTTCATCGCACTGAAACGCGGCGAGCACTACCAGATCCTGGTCTTCCTCGAGG
ACCTCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTCGCCGCCCTGGGCCGTCTGACCGCCGGTATCGCCCATGAA
ATCCGCAACCCGCTGGGTGCCATCAGTCACGCAGCCCAGTTGCTGCAGGAGTCGGAGCTGATGCCGGAGGCGGACCGACG
TCTCACGCAGATCATCCAGGACCAGTCCAAGCGGCTGAACCTGGTGATCGAGAACGTGCTCCAGCTGTCCCGGCGACGCC
CGACGCAACCGCAATTGCTCGACCTCAACGAATGGCTACAGGCGTTTGTCGGCGAGTGGCGCGAGCACGCCCGGCCCAAC
CAGTGCCTGCACCTGCAGATCGATGACAAGTCCCTGCAGACCCGCGCCGATCCGCTGCAACTGGCCCAGGTGCTGAACAA
CCTGTTGGAAAACGGTCTGCGCTACAGCGCCCAGTTGCATGAGTTGGCGCAAGTCTGGCTGACCTTGTCGGAGGACCCGA
ACAACGGCTTGCCGACCCTGGAAGTCCTCGATGACGGCCCCGGCGTCGCCCCCGAACAGCGCCAGCACCTGTTCGAACCC
TTCTTCACCACCGAGAGCAAGGGCACGGGCCTGGGCCTGTACCTGTCCCGCGAGCTATGCGAAAGCAACCAGGCCCGCCT
AGACTACTCGGTACGCCAAGGCGGCAGTTGCTTTCGCATCACCTTCGCACACGCACGTAAACTGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.151

100

0.643