Detailed information NTG0933956

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: VZ068_RS14470
• Genome accession: NZ_CP144460
• Coordinates: 3442636..3443175 (-)
• Length: 179 a.a.
• NCBI ID: WP_259151715.1
• Uniprot ID: A0AAU7P4U2
• Organism: Xanthomonas sp. 10-10
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3421094..3442504	3442636..3443175	flank	132

Gene organization within MGE regions

Location: 3421094..3443175

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZ068_RS14400 (VZ068_14405)	-	3421094..3422854 (-)	1761	WP_349655675.1	hypothetical protein	-
VZ068_RS14405 (VZ068_14410)	-	3423319..3424389 (-)	1071	WP_349655676.1	hypothetical protein	-
VZ068_RS14410 (VZ068_14415)	-	3424807..3425685 (+)	879	WP_349655677.1	hypothetical protein	-
VZ068_RS14415 (VZ068_14420)	-	3425760..3426602 (+)	843	WP_349655678.1	XVIPCD domain-containing protein	-
VZ068_RS14420 (VZ068_14425)	-	3426679..3426921 (-)	243	WP_349655679.1	helix-turn-helix transcriptional regulator	-
VZ068_RS14425 (VZ068_14430)	-	3427092..3427805 (+)	714	WP_349655680.1	hypothetical protein	-
VZ068_RS14430 (VZ068_14435)	-	3427945..3428214 (+)	270	WP_323545139.1	BPSL0761 family protein	-
VZ068_RS14435 (VZ068_14440)	avs1c	3428427..3428699 (-)	273	WP_349655681.1	AVAST type 1 anti-phage system protein Avs1c	-
VZ068_RS14440 (VZ068_14445)	avs1b	3428726..3434563 (-)	5838	WP_349655682.1	AVAST type 1 anti-phage system protease Avs1b	-
VZ068_RS14445 (VZ068_14450)	avs1a	3434560..3435741 (-)	1182	WP_349655683.1	AVAST type 1 anti-phage system MBL fold metallo-hydrolase Avs1a	-
VZ068_RS14450 (VZ068_14455)	-	3436432..3437172 (-)	741	WP_349655684.1	hypothetical protein	-
VZ068_RS14455 (VZ068_14460)	-	3437655..3439700 (-)	2046	WP_349655685.1	integrase	-
VZ068_RS14460 (VZ068_14465)	-	3439690..3441324 (-)	1635	WP_349655686.1	site-specific integrase	-
VZ068_RS14465 (VZ068_14470)	-	3441224..3442504 (-)	1281	WP_349655687.1	site-specific integrase	-
VZ068_RS14470 (VZ068_14475)	ssb	3442636..3443175 (-)	540	WP_259151715.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 179 a.a.
• Molecular weight: 19107.99 Da
• Isoelectric Point: 5.3177

>NTDB_id=933956 VZ068_RS14470 WP_259151715.1 3442636..3443175(-) (ssb) [Xanthomonas sp. 10-10]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRAQAPRQQGGGGGGGQGGYGGGGGGQDYAPRRQQP
AQQQSAPPMDDFADDDIPF

Nucleotide

• Length: 540 bp

>NTDB_id=933956 VZ068_RS14470 WP_259151715.1 3442636..3443175(-) (ssb) [Xanthomonas sp. 10-10]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTCAGCCTGGCCACCACCAGCATGCGCAAGGATCGCGAAGGCAATAACCAGGAGCGCACCGAGTGGC
ATCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGTCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGCGGTGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCCCCGCGTCAGCAGG
GCGGTGGCGGTGGTGGTGGCCAGGGCGGTTACGGTGGCGGCGGCGGTGGCCAGGACTATGCCCCGCGTCGTCAGCAGCCG
GCCCAGCAGCAGTCGGCGCCGCCGATGGACGATTTTGCCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (5-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	45.026	100	0.48
ssb	Glaesserella parasuis strain SC1401	46.111	100	0.464
ssb	Neisseria meningitidis MC58	44.751	100	0.453
ssb	Neisseria gonorrhoeae MS11	44.751	100	0.453