Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V4H42_RS07170 Genome accession   NZ_CP144454
Coordinates   1508106..1508606 (+) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain PM1463     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1503106..1513606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4H42_RS07155 (V4H42_07155) rlmB 1503649..1504386 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  V4H42_RS07160 (V4H42_07160) sodC 1504472..1505032 (-) 561 WP_005725042.1 superoxide dismutase family protein -
  V4H42_RS07165 (V4H42_07165) uvrA 1505103..1507934 (-) 2832 WP_014668303.1 excinuclease ABC subunit UvrA -
  V4H42_RS07170 (V4H42_07170) ssb 1508106..1508606 (+) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  V4H42_RS07175 (V4H42_07175) - 1508813..1509043 (-) 231 WP_258809471.1 hypothetical protein -
  V4H42_RS07180 (V4H42_07180) folD 1509113..1509967 (-) 855 WP_115173599.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  V4H42_RS07195 (V4H42_07195) - 1510610..1511029 (+) 420 WP_115173600.1 DUF417 family protein -
  V4H42_RS07200 (V4H42_07200) lipA 1511107..1512069 (-) 963 WP_005719422.1 lipoyl synthase -
  V4H42_RS07205 (V4H42_07205) lipB 1512134..1512790 (-) 657 WP_115173601.1 lipoyl(octanoyl) transferase LipB -
  V4H42_RS07210 (V4H42_07210) ybeD 1512797..1513093 (-) 297 WP_005719420.1 DUF493 family protein YbeD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=933911 V4H42_RS07170 WP_005725039.1 1508106..1508606(+) (ssb) [Pasteurella multocida strain PM1463]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=933911 V4H42_RS07170 WP_005725039.1 1508106..1508606(+) (ssb) [Pasteurella multocida strain PM1463]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47