Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   V4H42_RS06440 Genome accession   NZ_CP144454
Coordinates   1340829..1342040 (-) Length   403 a.a.
NCBI ID   WP_338544147.1    Uniprot ID   -
Organism   Pasteurella multocida strain PM1463     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1335829..1347040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4H42_RS06410 (V4H42_06410) raiA 1336605..1336922 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  V4H42_RS06415 (V4H42_06415) - 1337167..1338540 (-) 1374 WP_014326297.1 sodium:alanine symporter family protein -
  V4H42_RS06420 (V4H42_06420) - 1338989..1339258 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  V4H42_RS06425 (V4H42_06425) yacG 1339258..1339461 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  V4H42_RS06430 (V4H42_06430) coaE 1339472..1340092 (-) 621 WP_005751078.1 dephospho-CoA kinase -
  V4H42_RS06435 (V4H42_06435) - 1340107..1340829 (-) 723 WP_115173559.1 A24 family peptidase -
  V4H42_RS06440 (V4H42_06440) pilC 1340829..1342040 (-) 1212 WP_338544147.1 type II secretion system F family protein Machinery gene
  V4H42_RS06445 (V4H42_06445) pilB 1342040..1343425 (-) 1386 WP_115173561.1 GspE/PulE family protein Machinery gene
  V4H42_RS06450 (V4H42_06450) pilA 1343425..1343859 (-) 435 WP_115173562.1 prepilin peptidase-dependent pilin Machinery gene
  V4H42_RS06455 (V4H42_06455) ampD 1344018..1344584 (+) 567 WP_115173563.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  V4H42_RS06460 (V4H42_06460) rppH 1345170..1345766 (+) 597 WP_005722417.1 RNA pyrophosphohydrolase -
  V4H42_RS06465 (V4H42_06465) - 1345769..1346563 (+) 795 WP_338544150.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46022.02 Da        Isoelectric Point: 9.9508

>NTDB_id=933904 V4H42_RS06440 WP_338544147.1 1340829..1342040(-) (pilC) [Pasteurella multocida strain PM1463]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQLSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLGLRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNVSAGLRGYAFQLSLLLIFGFIFLLLNARQRVGLY
RLKNCLLHFLPIFKKIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHELTKMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=933904 V4H42_RS06440 WP_338544147.1 1340829..1342040(-) (pilC) [Pasteurella multocida strain PM1463]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAGCAAATACAAAAAGGAGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGCTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCATCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCTACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCGCTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGGGTTACGACGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATGTATCGGCAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGCTGTTAAATGCGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCCTTCCAATCTTTAAGAAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTGCAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGAGCTTACCAAGATGCGACTGGCTGAAGAAGTACAGTTAATGTTAAAGGGGATTGCTCAAGGTTATACG
TTTTCTGAGGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGTGTCATTTTATTGGGTATGTATTTACCGATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.148

100

0.484
  pilC Haemophilus influenzae 86-028NP

47.901

100

0.481
  pilC Glaesserella parasuis strain SC1401

39.012

100

0.392