Detailed information NTG0933761

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: ACDZ07_RS08280
• Genome accession: NZ_CP168012
• Coordinates: 1704640..1705326 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692870.1
• Uniprot ID: Q8NW77
• Organism: Staphylococcus aureus strain sa230905_barcode06
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1699640..1710326

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDZ07_RS08235 (ACDZ07_08235)	rpmA	1700411..1700695 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
ACDZ07_RS08240 (ACDZ07_08240)	-	1700707..1701027 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
ACDZ07_RS08245 (ACDZ07_08245)	rplU	1701033..1701341 (-)	309	WP_098817880.1	50S ribosomal protein L21	-
ACDZ07_RS08250 (ACDZ07_08250)	mreD	1701577..1702107 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
ACDZ07_RS08255 (ACDZ07_08255)	mreC	1702107..1702949 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
ACDZ07_RS08260 (ACDZ07_08260)	-	1703148..1703267 (-)	120	WP_000840602.1	hypothetical protein	-
ACDZ07_RS08265 (ACDZ07_08265)	-	1703341..1703814 (-)	474	WP_001236734.1	DUF4930 family protein	-
ACDZ07_RS08270 (ACDZ07_08270)	-	1703974..1704171 (+)	198	WP_000025835.1	hypothetical protein	-
ACDZ07_RS08275 (ACDZ07_08275)	-	1704288..1704572 (-)	285	WP_000171859.1	hypothetical protein	-
ACDZ07_RS08280 (ACDZ07_08280)	ysxA/radC	1704640..1705326 (-)	687	WP_000692870.1	RadC family protein	Machinery gene
ACDZ07_RS08285 (ACDZ07_08285)	-	1705323..1706030 (-)	708	WP_000261115.1	prepilin peptidase	-
ACDZ07_RS08290 (ACDZ07_08290)	-	1706300..1707571 (-)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
ACDZ07_RS08295 (ACDZ07_08295)	-	1707584..1710214 (-)	2631	WP_000425353.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.28 Da
• Isoelectric Point: 7.0539

>NTDB_id=933761 ACDZ07_RS08280 WP_000692870.1 1704640..1705326(-) (ysxA/radC) [Staphylococcus aureus strain sa230905_barcode06]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=933761 ACDZ07_RS08280 WP_000692870.1 1704640..1705326(-) (ysxA/radC) [Staphylococcus aureus strain sa230905_barcode06]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

3D structure

• AlphaFold DB: Q8NW77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377