Detailed information NTG0933671

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: ACDZ06_RS08180
• Genome accession: NZ_CP168010
• Coordinates: 1689145..1689831 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692871.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain sa231003_barcode77
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1684145..1694831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDZ06_RS08135 (ACDZ06_08135)	rpmA	1684916..1685200 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
ACDZ06_RS08140 (ACDZ06_08140)	-	1685212..1685532 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
ACDZ06_RS08145 (ACDZ06_08145)	rplU	1685538..1685846 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
ACDZ06_RS08150 (ACDZ06_08150)	mreD	1686082..1686612 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
ACDZ06_RS08155 (ACDZ06_08155)	mreC	1686612..1687454 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
ACDZ06_RS08160 (ACDZ06_08160)	-	1687653..1687772 (-)	120	WP_000840602.1	hypothetical protein	-
ACDZ06_RS08165 (ACDZ06_08165)	-	1687846..1688319 (-)	474	WP_001236734.1	DUF4930 family protein	-
ACDZ06_RS08170 (ACDZ06_08170)	-	1688479..1688676 (+)	198	WP_000025835.1	hypothetical protein	-
ACDZ06_RS08175 (ACDZ06_08175)	-	1688793..1689077 (-)	285	WP_000171859.1	hypothetical protein	-
ACDZ06_RS08180 (ACDZ06_08180)	ysxA/radC	1689145..1689831 (-)	687	WP_000692871.1	RadC family protein	Machinery gene
ACDZ06_RS08185 (ACDZ06_08185)	-	1689828..1690535 (-)	708	WP_000261115.1	prepilin peptidase	-
ACDZ06_RS08190 (ACDZ06_08190)	-	1690805..1692076 (-)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
ACDZ06_RS08195 (ACDZ06_08195)	-	1692089..1694719 (-)	2631	WP_000425353.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25325.31 Da
• Isoelectric Point: 7.0540

>NTDB_id=933671 ACDZ06_RS08180 WP_000692871.1 1689145..1689831(-) (ysxA/radC) [Staphylococcus aureus strain sa231003_barcode77]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLEHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=933671 ACDZ06_RS08180 WP_000692871.1 1689145..1689831(-) (ysxA/radC) [Staphylococcus aureus strain sa231003_barcode77]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGAGCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.232	98.246	0.513
radC	Streptococcus gordonii str. Challis substr. CH1	39.45	95.614	0.377
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373