Detailed information NTG0933582

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: ACCK12_RS08560
• Genome accession: NZ_CP167990
• Coordinates: 1746898..1747584 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692870.1
• Uniprot ID: Q8NW77
• Organism: Staphylococcus aureus strain CUBIST-4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1741898..1752584

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCK12_RS08515 (ACCK12_08515)	rpmA	1742737..1743021 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
ACCK12_RS08520 (ACCK12_08520)	-	1743033..1743353 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
ACCK12_RS08525 (ACCK12_08525)	rplU	1743359..1743667 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
ACCK12_RS08530 (ACCK12_08530)	mreD	1743834..1744364 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
ACCK12_RS08535 (ACCK12_08535)	mreC	1744364..1745206 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
ACCK12_RS08540 (ACCK12_08540)	-	1745406..1745525 (-)	120	WP_000840602.1	hypothetical protein	-
ACCK12_RS08545 (ACCK12_08545)	-	1745599..1746072 (-)	474	WP_001236735.1	DUF4930 family protein	-
ACCK12_RS08550 (ACCK12_08550)	-	1746232..1746429 (+)	198	WP_000025835.1	hypothetical protein	-
ACCK12_RS08555 (ACCK12_08555)	-	1746546..1746830 (-)	285	WP_000171859.1	hypothetical protein	-
ACCK12_RS08560 (ACCK12_08560)	ysxA/radC	1746898..1747584 (-)	687	WP_000692870.1	DNA repair protein RadC	Machinery gene
ACCK12_RS08565 (ACCK12_08565)	-	1747581..1748288 (-)	708	WP_000261115.1	A24 family peptidase	-
ACCK12_RS08570 (ACCK12_08570)	-	1748558..1749829 (-)	1272	WP_001108346.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
ACCK12_RS08575 (ACCK12_08575)	-	1749842..1752472 (-)	2631	WP_000425353.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.28 Da
• Isoelectric Point: 7.0539

>NTDB_id=933582 ACCK12_RS08560 WP_000692870.1 1746898..1747584(-) (ysxA/radC) [Staphylococcus aureus strain CUBIST-4]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=933582 ACCK12_RS08560 WP_000692870.1 1746898..1747584(-) (ysxA/radC) [Staphylococcus aureus strain CUBIST-4]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

3D structure

• AlphaFold DB: Q8NW77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377