Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   V3I11_RS01640 Genome accession   NZ_CP144280
Coordinates   334051..334398 (+) Length   115 a.a.
NCBI ID   WP_005686287.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P3_EMO     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329051..339398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I11_RS01625 (V3I11_01625) - 330797..332356 (+) 1560 WP_032821875.1 phosphoethanolamine transferase -
  V3I11_RS01630 (V3I11_01630) lspA 332426..332941 (+) 516 WP_005655980.1 signal peptidase II -
  V3I11_RS01635 (V3I11_01635) ispH 332938..333882 (+) 945 WP_005651634.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  V3I11_RS01640 (V3I11_01640) comE1/comEA 334051..334398 (+) 348 WP_005686287.1 helix-hairpin-helix domain-containing protein Machinery gene
  V3I11_RS01645 (V3I11_01645) thiB 334645..335643 (+) 999 WP_005686289.1 thiamine ABC transporter substrate binding subunit -
  V3I11_RS01650 (V3I11_01650) thiP 335648..337264 (+) 1617 WP_042599614.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  V3I11_RS01655 (V3I11_01655) thiQ 337248..337895 (+) 648 WP_005647864.1 thiamine ABC transporter ATP-binding protein -
  V3I11_RS01660 (V3I11_01660) bioB 338008..339009 (+) 1002 WP_005655985.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12363.23 Da        Isoelectric Point: 8.0085

>NTDB_id=933297 V3I11_RS01640 WP_005686287.1 334051..334398(+) (comE1/comEA) [Haemophilus influenzae strain P3_EMO]
MKLMKTLFTSVVLCGVLVVSSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=933297 V3I11_RS01640 WP_005686287.1 334051..334398(+) (comE1/comEA) [Haemophilus influenzae strain P3_EMO]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGTGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

95.536

97.391

0.93
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383
  comEA Acinetobacter baumannii strain A118

32.824

100

0.374