Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACDW37_RS03640 Genome accession   NZ_CP167985
Coordinates   751374..751871 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 0502d1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 746374..756871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW37_RS03625 (ACDW37_03625) bfr 746382..746846 (+) 465 WP_003093668.1 bacterioferritin -
  ACDW37_RS03630 (ACDW37_03630) uvrA 746918..749755 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  ACDW37_RS03635 (ACDW37_03635) - 749969..751357 (+) 1389 WP_003103910.1 MFS transporter -
  ACDW37_RS03640 (ACDW37_03640) ssb 751374..751871 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  ACDW37_RS03645 (ACDW37_03645) pchA 751960..753390 (-) 1431 WP_003118152.1 isochorismate synthase PchA -
  ACDW37_RS03650 (ACDW37_03650) pchB 753387..753692 (-) 306 WP_010793476.1 isochorismate lyase PchB -
  ACDW37_RS03655 (ACDW37_03655) pchC 753692..754447 (-) 756 WP_003142837.1 pyochelin biosynthesis editing thioesterase PchC -
  ACDW37_RS03660 (ACDW37_03660) pchD 754444..756087 (-) 1644 WP_372435610.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=933245 ACDW37_RS03640 WP_003114685.1 751374..751871(+) (ssb) [Pseudomonas aeruginosa strain 0502d1]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=933245 ACDW37_RS03640 WP_003114685.1 751374..751871(+) (ssb) [Pseudomonas aeruginosa strain 0502d1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTATGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515