Detailed information NTG0933065

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Aeroheme_RS02350
• Genome accession: NZ_CP144265
• Coordinates: 476341..477213 (-)
• Length: 290 a.a.
• NCBI ID: WP_411166623.1
• Uniprot ID: -
• Organism: Aeromonas sp. DSM 116730
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 471341..482213

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Aeroheme_RS02325 (Aeroheme_00470)	secA	471389..474109 (+)	2721	WP_111911128.1	preprotein translocase subunit SecA	-
Aeroheme_RS02330 (Aeroheme_00471)	mutT	474265..474669 (+)	405	WP_111911126.1	8-oxo-dGTP diphosphatase MutT	-
Aeroheme_RS02335 (Aeroheme_00472)	yacG	474744..474938 (-)	195	WP_025328449.1	DNA gyrase inhibitor YacG	-
Aeroheme_RS02340 (Aeroheme_00473)	zapD	474948..475670 (-)	723	WP_168235912.1	cell division protein ZapD	-
Aeroheme_RS02345 (Aeroheme_00474)	coaE	475708..476322 (-)	615	WP_411166622.1	dephospho-CoA kinase	-
Aeroheme_RS02350 (Aeroheme_00475)	pilD	476341..477213 (-)	873	WP_411166623.1	prepilin peptidase	Machinery gene
Aeroheme_RS02355 (Aeroheme_00476)	pilC	477294..478535 (-)	1242	WP_106885656.1	type II secretion system F family protein	Machinery gene
Aeroheme_RS02360 (Aeroheme_00477)	pilB	478666..480372 (-)	1707	WP_411166624.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
Aeroheme_RS02365	-	480376..480810 (-)	435	WP_395949385.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
Aeroheme_RS02370 (Aeroheme_00478)	nadC	481123..481986 (-)	864	WP_411166625.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31954.17 Da
• Isoelectric Point: 6.3226

>NTDB_id=933065 Aeroheme_RS02350 WP_411166623.1 476341..477213(-) (pilD) [Aeromonas sp. DSM 116730]
MVPLIELAQGLPWLYLSLVFLFSLMVGSFLNVVIHRLPIMLEREWQAEYSDYFGSDVAASPAEPYNLMVPRSRCPHCDHP
IGALENIPLLSWLWLKGRCRQCQAPISTRYPLVELLTALLSVAVAATLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=933065 Aeroheme_RS02350 WP_411166623.1 476341..477213(-) (pilD) [Aeromonas sp. DSM 116730]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGGTTTTTCTCTTTTCCCTGATGGTTGG
CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATACAGTGACTACTTCG
GCAGCGATGTGGCCGCCTCCCCCGCCGAGCCCTACAACCTGATGGTGCCGCGCTCCCGCTGCCCGCACTGCGATCACCCC
ATAGGCGCGCTGGAGAACATCCCCCTGTTGAGCTGGCTCTGGCTCAAGGGGCGCTGCCGGCAATGCCAGGCGCCTATCTC
GACCCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCGCCGTCGCCGCGACCCTGGCTCCGGGATGGGGCA
CCCTGGCCGCGCTCCTGCTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGTTGCTGCCGGACCAA
CTCACCCTGCCGCTGCTGTGGGGCGGTCTGCTGTTCAATCTGGCGGGGGGCTTTGTGCCACTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGCTATG
GAGACTTCAAACTGCTGGCGGCGCTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCGTCACTG
GTCGGCGCCATCATCGGCATAGGGCTCATACTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTATCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.053	98.276	0.6
pilD	Vibrio campbellii strain DS40M4	57.439	99.655	0.572
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Acinetobacter baumannii D1279779	53.237	95.862	0.51
pilD	Neisseria gonorrhoeae MS11	50	91.724	0.459