Detailed information NTG0932624

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VX159_RS12985
• Genome accession: NZ_CP144212
• Coordinates: 2851862..2852719 (+)
• Length: 285 a.a.
• NCBI ID: WP_371325523.1
• Uniprot ID: -
• Organism: Dechloromonas sp. ZY10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2846862..2857719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VX159_RS12970 (VX159_12955)	-	2847543..2848820 (+)	1278	WP_371323306.1	HlyC/CorC family transporter	-
VX159_RS12975 (VX159_12960)	pilB	2848899..2850617 (+)	1719	WP_371323307.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VX159_RS12980 (VX159_12965)	pilC	2850633..2851862 (+)	1230	WP_371323308.1	type II secretion system F family protein	Machinery gene
VX159_RS12985 (VX159_12970)	pilD	2851862..2852719 (+)	858	WP_371325523.1	A24 family peptidase	Machinery gene
VX159_RS12990 (VX159_12975)	-	2852806..2853057 (+)	252	WP_371323309.1	FmdB family zinc ribbon protein	-
VX159_RS12995 (VX159_12980)	-	2853057..2853695 (+)	639	WP_371325524.1	DUF502 domain-containing protein	-
VX159_RS13000 (VX159_12985)	aspS	2853718..2855517 (+)	1800	WP_371323310.1	aspartate--tRNA ligase	-
VX159_RS13005 (VX159_12990)	-	2855521..2855949 (+)	429	WP_371323311.1	ribonuclease domain-containing protein	-
VX159_RS13010 (VX159_12995)	-	2855973..2856398 (+)	426	WP_371323312.1	barstar family protein	-
VX159_RS13015 (VX159_13000)	nudB	2856395..2856868 (+)	474	WP_371323313.1	dihydroneopterin triphosphate diphosphatase	-
VX159_RS13020 (VX159_13005)	-	2856926..2857354 (+)	429	WP_371323314.1	Hsp20/alpha crystallin family protein	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 30731.51 Da
• Isoelectric Point: 8.0463

>NTDB_id=932624 VX159_RS12985 WP_371325523.1 2851862..2852719(+) (pilD) [Dechloromonas sp. ZY10]
MMPETLGGLAAAAGLLGLCVGSFLNVVVHRLPKMMEQEWREQCAELCGENCKNPQSTVEKLSLARPRSRCPACGHVIRAY
ENIPLLSYLLLRGRCSACHQSISLRYPLVELLTAALSAGAAWHFGPSWQTVGALALLWALVALTMIDLDTQLLPDSITLP
LLWLGLLINLHGHFVSLEAAVIGAVAGYLALWSVFWLFKLATGKEGMGYGDFKLLAALGAWLGWSMLPTIVLLSSLVGAC
VGIGLIVFARHGRNVPIPFGPYLAAAGVIALFWGEKINRTYLGLL

Nucleotide

• Length: 858 bp

>NTDB_id=932624 VX159_RS12985 WP_371325523.1 2851862..2852719(+) (pilD) [Dechloromonas sp. ZY10]
ATGATGCCGGAAACCTTGGGTGGCCTGGCGGCCGCCGCCGGACTGCTAGGCTTGTGCGTCGGCAGCTTTCTGAATGTAGT
GGTCCACCGCCTGCCAAAAATGATGGAGCAGGAATGGCGCGAACAATGCGCGGAGCTTTGCGGTGAAAATTGCAAAAACC
CGCAGTCGACCGTGGAAAAGCTGTCGCTGGCCCGCCCCCGCTCCCGCTGCCCGGCGTGTGGACACGTCATTCGTGCATAC
GAAAACATTCCGCTGCTCAGCTACCTGCTGCTGCGTGGCCGCTGCTCGGCTTGCCATCAGTCGATTTCGCTTCGCTACCC
GCTGGTCGAACTGCTTACCGCCGCACTCTCGGCAGGAGCTGCCTGGCACTTTGGCCCCAGTTGGCAAACCGTCGGCGCCC
TCGCCTTGCTCTGGGCCCTGGTTGCGCTGACGATGATTGACCTCGATACGCAGCTGCTGCCAGACAGCATCACCCTGCCT
TTGCTCTGGCTCGGCCTGCTGATCAATCTGCATGGGCATTTCGTTTCTCTCGAAGCCGCCGTCATCGGCGCAGTTGCTGG
CTACCTGGCGCTCTGGAGCGTATTCTGGCTATTCAAGCTGGCGACCGGCAAGGAGGGCATGGGCTATGGCGATTTCAAGC
TGCTGGCGGCGCTTGGCGCCTGGCTCGGCTGGAGCATGTTGCCGACCATCGTCCTGCTCTCTTCGCTGGTCGGCGCCTGC
GTCGGGATCGGGCTGATCGTCTTCGCCCGCCACGGACGCAATGTCCCGATTCCCTTCGGCCCTTACCTCGCAGCCGCAGG
TGTTATCGCGCTCTTCTGGGGCGAAAAGATCAACCGGACCTATCTTGGCCTGCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.565	95.088	0.547
pilD	Vibrio campbellii strain DS40M4	56.089	95.088	0.533
pilD	Acinetobacter nosocomialis M2	53.571	98.246	0.526
pilD	Acinetobacter baumannii D1279779	53.214	98.246	0.523
pilD	Neisseria gonorrhoeae MS11	50.562	93.684	0.474