Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VX159_RS12980 Genome accession   NZ_CP144212
Coordinates   2850633..2851862 (+) Length   409 a.a.
NCBI ID   WP_371323308.1    Uniprot ID   -
Organism   Dechloromonas sp. ZY10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2845633..2856862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VX159_RS12965 (VX159_12950) - 2846703..2847542 (+) 840 WP_371323305.1 inner membrane protein YpjD -
  VX159_RS12970 (VX159_12955) - 2847543..2848820 (+) 1278 WP_371323306.1 HlyC/CorC family transporter -
  VX159_RS12975 (VX159_12960) pilB 2848899..2850617 (+) 1719 WP_371323307.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VX159_RS12980 (VX159_12965) pilC 2850633..2851862 (+) 1230 WP_371323308.1 type II secretion system F family protein Machinery gene
  VX159_RS12985 (VX159_12970) pilD 2851862..2852719 (+) 858 WP_371325523.1 A24 family peptidase Machinery gene
  VX159_RS12990 (VX159_12975) - 2852806..2853057 (+) 252 WP_371323309.1 FmdB family zinc ribbon protein -
  VX159_RS12995 (VX159_12980) - 2853057..2853695 (+) 639 WP_371325524.1 DUF502 domain-containing protein -
  VX159_RS13000 (VX159_12985) aspS 2853718..2855517 (+) 1800 WP_371323310.1 aspartate--tRNA ligase -
  VX159_RS13005 (VX159_12990) - 2855521..2855949 (+) 429 WP_371323311.1 ribonuclease domain-containing protein -
  VX159_RS13010 (VX159_12995) - 2855973..2856398 (+) 426 WP_371323312.1 barstar family protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44764.83 Da        Isoelectric Point: 9.6629

>NTDB_id=932623 VX159_RS12980 WP_371323308.1 2850633..2851862(+) (pilC) [Dechloromonas sp. ZY10]
MATTAKPKVPTVKESIFQWEGKSRDGKSVRGEMRAASESVVQATLRRQGISKTTVKKLKFKSGGKISDKDITLFTRQLAT
MMKAGVPLLQSFDIVGRGHANPAVGKLLLDIKADVETGSSLSQAFRKYPLYFDNLFCNLIAAGEAAGILDSLLDRLATYK
EKMQAIKGKIKSALFYPIAVIAVAIIITAVIMIFVIPAFKDVFKSFGADLPTPTLIVIAMSDFFVEWWWLIFGCMGGAIY
SFFETWKRSEKMQMVMDRLFLRLPIFGEVIRKSVIARWTRTLATMFAAGVPLVEALDSVGGASGNYVYKIATREIQAEVS
TGTNLTQAMQNVNLFPNMVTQMVAIGEESGALDSMLSKVADFFEAEVDDAVEALSSLMEPMIMVILGTLIGGMVVAMYLP
IFKMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=932623 VX159_RS12980 WP_371323308.1 2850633..2851862(+) (pilC) [Dechloromonas sp. ZY10]
ATGGCGACCACAGCCAAACCCAAAGTGCCCACAGTCAAGGAAAGCATTTTCCAATGGGAAGGTAAAAGCCGCGACGGCAA
GTCGGTGCGAGGCGAGATGCGTGCCGCCAGCGAATCCGTAGTTCAGGCCACCCTGCGTCGCCAGGGCATCAGCAAAACCA
CCGTCAAAAAACTGAAATTCAAGTCGGGCGGCAAAATCAGTGACAAGGACATCACCCTGTTCACCCGGCAACTGGCGACC
ATGATGAAGGCCGGCGTCCCCTTGCTGCAATCCTTCGACATCGTCGGCCGTGGCCACGCCAATCCCGCCGTCGGCAAACT
GCTGCTCGACATCAAGGCCGACGTCGAGACCGGCAGTTCGCTGTCGCAGGCTTTTCGCAAATACCCGCTGTATTTCGACA
ATTTGTTCTGCAACCTGATCGCTGCCGGCGAAGCAGCGGGGATTCTCGACAGCCTGCTCGACCGCCTGGCAACCTACAAG
GAAAAAATGCAGGCAATCAAAGGCAAAATCAAGTCGGCACTGTTTTATCCGATCGCTGTTATCGCTGTCGCCATCATCAT
TACAGCGGTCATCATGATCTTCGTCATCCCCGCCTTCAAAGATGTCTTCAAAAGTTTCGGCGCCGACCTGCCAACTCCAA
CCCTGATCGTGATTGCGATGTCGGATTTCTTCGTCGAGTGGTGGTGGCTGATATTCGGCTGCATGGGGGGGGCCATCTAC
AGCTTTTTCGAGACCTGGAAACGCTCGGAAAAAATGCAGATGGTCATGGACCGCCTGTTCCTGCGTCTACCAATCTTCGG
CGAGGTGATCCGCAAATCGGTGATTGCCCGCTGGACGCGCACTTTGGCCACGATGTTCGCTGCCGGCGTACCGCTGGTCG
AAGCACTGGACTCGGTAGGCGGAGCCTCCGGCAATTATGTTTACAAGATCGCCACCCGCGAGATTCAGGCCGAGGTCTCG
ACCGGCACCAACCTGACCCAGGCCATGCAGAACGTCAACCTCTTCCCCAACATGGTCACCCAGATGGTAGCGATTGGCGA
AGAATCAGGTGCTCTCGACTCGATGCTCTCGAAAGTCGCCGATTTTTTCGAGGCCGAAGTCGATGATGCGGTTGAGGCGC
TTTCAAGCTTGATGGAACCGATGATCATGGTAATACTCGGCACCCTGATCGGCGGCATGGTAGTCGCCATGTATCTGCCA
ATTTTCAAGATGGGGAGCGTCGTCGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.25

97.8

0.531
  pilG Neisseria gonorrhoeae MS11

54.156

97.066

0.526
  pilC Legionella pneumophila strain ERS1305867

54.04

96.822

0.523
  pilG Neisseria meningitidis 44/76-A

53.652

97.066

0.521
  pilC Acinetobacter baylyi ADP1

52.513

97.311

0.511
  pilC Acinetobacter baumannii D1279779

51.88

97.555

0.506
  pilC Vibrio cholerae strain A1552

41.058

97.066

0.399
  pilC Vibrio campbellii strain DS40M4

39.312

99.511

0.391
  pilC Thermus thermophilus HB27

36.538

100

0.372