Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VX159_RS02395 Genome accession   NZ_CP144212
Coordinates   512486..512995 (+) Length   169 a.a.
NCBI ID   WP_371324394.1    Uniprot ID   -
Organism   Dechloromonas sp. ZY10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 507486..517995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VX159_RS02385 (VX159_02385) - 508964..510847 (-) 1884 WP_371324392.1 methyl-accepting chemotaxis protein -
  VX159_RS02390 (VX159_02390) - 511265..512479 (+) 1215 WP_371324393.1 MFS transporter -
  VX159_RS02395 (VX159_02395) ssb 512486..512995 (+) 510 WP_371324394.1 single-stranded DNA-binding protein Machinery gene
  VX159_RS02400 (VX159_02400) - 513180..514028 (+) 849 WP_371324395.1 HDOD domain-containing protein -
  VX159_RS02405 (VX159_02405) - 514084..515976 (+) 1893 WP_371324396.1 potassium transporter Kup -
  VX159_RS02410 (VX159_02410) - 516031..517653 (-) 1623 WP_371324397.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18275.22 Da        Isoelectric Point: 5.9572

>NTDB_id=932612 VX159_RS02395 WP_371324394.1 512486..512995(+) (ssb) [Dechloromonas sp. ZY10]
MASVNKVILVGNLGADPETRYTASGDAICNIRLATTDSWKDKNTGEKREMTEWHRVVFYRRLAEIAGQYLKKGSSVYIEG
RIKTRKWQDKDGQDRYTTEIEATEMQMLGGRQGMGAPAQQGGAGGYGGGSGGGGYGGGGYDNEPADYSPAPPKNRPKPSF
DDLGDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=932612 VX159_RS02395 WP_371324394.1 512486..512995(+) (ssb) [Dechloromonas sp. ZY10]
ATGGCATCGGTCAACAAGGTCATTCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTACACCGCGAGCGGCGACGC
AATCTGCAACATCCGTCTGGCGACCACCGATAGCTGGAAAGACAAGAACACCGGCGAAAAGCGCGAAATGACCGAATGGC
ATCGCGTCGTCTTCTACCGTCGCTTGGCCGAAATTGCCGGCCAGTATCTGAAGAAGGGTTCGTCGGTGTATATCGAAGGC
CGGATCAAGACCCGCAAGTGGCAGGACAAGGACGGCCAGGATCGTTACACCACCGAAATCGAAGCCACCGAAATGCAGAT
GCTCGGCGGTCGTCAGGGCATGGGCGCACCGGCGCAGCAAGGCGGCGCTGGCGGTTATGGCGGCGGCAGCGGTGGCGGTG
GTTACGGTGGCGGCGGCTACGACAACGAGCCGGCCGACTACTCGCCGGCCCCGCCGAAGAACCGGCCGAAGCCTTCGTTT
GACGACCTCGGCGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.459

100

0.568
  ssb Vibrio cholerae strain A1552

51.366

100

0.556
  ssb Neisseria meningitidis MC58

46.857

100

0.485
  ssb Neisseria gonorrhoeae MS11

46.857

100

0.485