Detailed information NTG0932556

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VUI23_RS16140
• Genome accession: NZ_CP144164
• Coordinates: 3766361..3767239 (+)
• Length: 292 a.a.
• NCBI ID: WP_342805005.1
• Uniprot ID: -
• Organism: Alteromonas sp. M12
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3761361..3772239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VUI23_RS16110	ampE	3761383..3762207 (-)	825	WP_303501359.1	beta-lactamase regulator AmpE	-
VUI23_RS16115	ampD	3762280..3762855 (-)	576	WP_342805001.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
VUI23_RS16120	-	3762913..3763437 (+)	525	WP_216047212.1	TIGR02281 family clan AA aspartic protease	-
VUI23_RS16125	nadC	3763498..3764337 (+)	840	WP_342805002.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VUI23_RS16130	pilA	3764543..3764953 (+)	411	WP_342805003.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
VUI23_RS16135	pilC	3765035..3766243 (+)	1209	WP_342805004.1	type II secretion system F family protein	Machinery gene
VUI23_RS16140	pilD	3766361..3767239 (+)	879	WP_342805005.1	A24 family peptidase	Machinery gene
VUI23_RS16145	coaE	3767236..3767853 (+)	618	WP_216047217.1	dephospho-CoA kinase	-
VUI23_RS16150	zapD	3768139..3768891 (+)	753	WP_303501372.1	cell division protein ZapD	-
VUI23_RS16155	yacG	3768907..3769140 (+)	234	WP_303501375.1	DNA gyrase inhibitor YacG	-
VUI23_RS16160	recJ	3769130..3770857 (-)	1728	WP_342805006.1	single-stranded-DNA-specific exonuclease RecJ	-
VUI23_RS16165	-	3770945..3771658 (-)	714	WP_342805007.1	thioredoxin fold domain-containing protein	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32729.82 Da
• Isoelectric Point: 7.6266

>NTDB_id=932556 VUI23_RS16140 WP_342805005.1 3766361..3767239(+) (pilD) [Alteromonas sp. M12]
MPAMFELLADSPLFFVSFVFVVSLLVGSFLNVVIYRLPLMMERGWKQEYQQYFQPESAEQASSETFNLIKPDSTCPKCQH
KIRAWENIPVISWLFLKGKCSQCKNPISFRYPAVELLTALASMAIAWHFGFGWQAAAAVLLTWCLIALIFIDIDKMLLPD
QITLPVLWLGLVFSTTGLFVSPIDAIIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWVGWQYLPIIILLSS
FVGAIIGISYLLIKGKDKGSHIPFGPYLAIAGWLTLIYGKDIANWYWSWAIA

Nucleotide

• Length: 879 bp

>NTDB_id=932556 VUI23_RS16140 WP_342805005.1 3766361..3767239(+) (pilD) [Alteromonas sp. M12]
ATGCCTGCGATGTTTGAGCTCTTAGCCGATTCACCCCTATTTTTTGTTAGTTTTGTCTTTGTCGTCAGTTTATTGGTAGG
CAGTTTTTTAAATGTGGTTATTTACCGCTTGCCGTTAATGATGGAAAGAGGTTGGAAACAAGAGTATCAACAATATTTCC
AGCCAGAATCGGCAGAACAAGCCTCTTCAGAGACGTTCAATTTAATTAAACCTGACTCAACTTGCCCTAAGTGCCAACAT
AAAATAAGAGCTTGGGAGAATATTCCAGTGATTAGCTGGCTTTTTCTTAAGGGAAAATGCAGTCAGTGCAAAAATCCAAT
TTCATTTCGCTACCCTGCCGTTGAGTTGCTGACTGCTTTAGCCAGCATGGCGATAGCCTGGCATTTTGGTTTCGGATGGC
AAGCCGCCGCCGCAGTGTTACTGACTTGGTGCCTGATTGCGTTAATTTTTATTGATATCGATAAAATGTTGTTACCGGAT
CAAATTACCCTGCCAGTTTTATGGTTAGGTCTAGTATTCAGTACCACGGGCTTATTTGTAAGTCCTATCGACGCCATAAT
TGGAGCGGCAGCAGGTTACCTAAGTCTGTGGAGTGTTTACTGGCTGTTTAAGTTACTCACAGGCAAAGAAGGAATGGGTT
ACGGTGATTTTAAATTGCTCGCAGCCTTAGGTGCTTGGGTCGGTTGGCAATACCTTCCGATCATCATATTACTTTCATCT
TTTGTTGGTGCAATTATAGGAATTAGCTATTTATTGATCAAAGGAAAAGATAAAGGCAGCCATATTCCTTTTGGTCCGTA
CTTGGCGATTGCCGGTTGGCTGACGTTAATTTATGGCAAAGATATAGCTAACTGGTATTGGAGTTGGGCAATAGCATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-129)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	56.993	97.945	0.558
pilD	Vibrio cholerae strain A1552	56.69	97.26	0.551
pilD	Acinetobacter baumannii D1279779	55.224	91.781	0.507
pilD	Acinetobacter nosocomialis M2	54.478	91.781	0.5
pilD	Neisseria gonorrhoeae MS11	48.432	98.288	0.476