Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VUI23_RS01900 Genome accession   NZ_CP144164
Coordinates   458846..459427 (+) Length   193 a.a.
NCBI ID   WP_342806576.1    Uniprot ID   -
Organism   Alteromonas sp. M12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 453846..464427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUI23_RS01890 - 456241..457593 (+) 1353 WP_342806573.1 MFS transporter -
  VUI23_RS01895 - 457671..458543 (+) 873 WP_342806575.1 CoA ester lyase -
  VUI23_RS01900 ssb 458846..459427 (+) 582 WP_342806576.1 single-stranded DNA-binding protein Machinery gene
  VUI23_RS01905 - 459704..461941 (+) 2238 WP_342806578.1 heparinase II/III family protein -
  VUI23_RS01910 - 462202..463356 (+) 1155 WP_342806580.1 serine hydrolase domain-containing protein -
  VUI23_RS01915 - 463470..464084 (-) 615 WP_342806582.1 hypothetical protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21361.49 Da        Isoelectric Point: 5.2614

>NTDB_id=932541 VUI23_RS01900 WP_342806576.1 458846..459427(+) (ssb) [Alteromonas sp. M12]
MATKGVNKVILVGNIGQDPEVRYMPNGNAVANLSLATSESWKDQSGQMQERTEWHRLTMYRRLAEIAGEYLRKGSQIYVE
GKLQTRKWQDQSGQDKYTTEIIVDQMQMLGGRGGQSDSQQGGYANQGGGQYNQAPQKPAQAPQQNYTKPPQQGGGQQYGN
APQQNPGQNPGQNPAQKPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=932541 VUI23_RS01900 WP_342806576.1 458846..459427(+) (ssb) [Alteromonas sp. M12]
ATGGCAACTAAAGGTGTCAACAAAGTCATTTTAGTGGGCAATATTGGACAAGATCCAGAAGTAAGATATATGCCTAACGG
CAATGCAGTAGCGAACTTAAGCTTGGCTACCAGTGAAAGCTGGAAAGATCAGAGCGGTCAGATGCAGGAACGTACAGAGT
GGCACAGACTGACTATGTACCGTCGCCTGGCAGAAATCGCTGGTGAATATCTGCGTAAAGGTTCGCAAATATATGTTGAA
GGCAAATTGCAGACACGTAAATGGCAAGATCAAAGTGGTCAAGACAAATACACCACTGAAATTATCGTTGACCAAATGCA
AATGCTTGGTGGCCGTGGCGGTCAGTCTGACAGTCAGCAAGGTGGCTATGCTAACCAAGGTGGCGGTCAATATAACCAAG
CGCCGCAAAAGCCAGCGCAAGCACCACAGCAGAATTACACTAAACCACCACAACAAGGCGGTGGTCAGCAATACGGTAAT
GCGCCGCAACAAAATCCAGGCCAAAACCCAGGCCAAAACCCAGCGCAAAAACCTCCTATGGCTGAGCCTGATTTTGACTT
TGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.61

100

0.591
  ssb Glaesserella parasuis strain SC1401

56.771

99.482

0.565
  ssb Neisseria meningitidis MC58

47.872

97.409

0.466
  ssb Neisseria gonorrhoeae MS11

47.872

97.409

0.466