Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V3D52_RS02440 Genome accession   NZ_CP144123
Coordinates   553736..554287 (+) Length   183 a.a.
NCBI ID   WP_016497749.1    Uniprot ID   A0A0Q4N073
Organism   Pseudomonas putida strain WBB028     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 548736..559287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3D52_RS02425 (V3D52_02425) bfr 548831..549295 (+) 465 WP_003257116.1 bacterioferritin -
  V3D52_RS02430 (V3D52_02430) uvrA 549368..552202 (-) 2835 WP_338745918.1 excinuclease ABC subunit UvrA -
  V3D52_RS02435 (V3D52_02435) - 552332..553726 (+) 1395 WP_338745919.1 MFS transporter -
  V3D52_RS02440 (V3D52_02440) ssb 553736..554287 (+) 552 WP_016497749.1 single-stranded DNA-binding protein Machinery gene
  V3D52_RS02445 (V3D52_02445) - 554358..554846 (-) 489 WP_338745920.1 heme-binding protein -
  V3D52_RS02450 (V3D52_02450) fdnG 555168..558236 (+) 3069 WP_338745921.1 formate dehydrogenase-N subunit alpha -
  V3D52_RS02455 (V3D52_02455) fdxH 558236..559186 (+) 951 WP_338745922.1 formate dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20301.40 Da        Isoelectric Point: 5.9286

>NTDB_id=932392 V3D52_RS02440 WP_016497749.1 553736..554287(+) (ssb) [Pseudomonas putida strain WBB028]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGGQQQQYNQAPPRQQAQRPQQAPQR
PAPQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=932392 V3D52_RS02440 WP_016497749.1 553736..554287(+) (ssb) [Pseudomonas putida strain WBB028]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGCCGTCCTCAGGGCCAGCAGCAAGGCGGCGACCCGTACAATCAGGGTGGCGGTAACTACAACC
AGGGTGGCGGCCAGCAGCAACAGTACAACCAGGCTCCGCCTCGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGC
CCAGCGCCCCAGCAGCCTGCGCCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q4N073

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.216

100

0.568
  ssb Glaesserella parasuis strain SC1401

48.969

100

0.519
  ssb Neisseria meningitidis MC58

48.108

100

0.486
  ssb Neisseria gonorrhoeae MS11

48.108

100

0.486