Detailed information NTG0093236

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: R8950_RS07000
• Genome accession: NZ_AP028355
• Coordinates: 1361747..1362754 (+)
• Length: 335 a.a.
• NCBI ID: WP_002859650.1
• Uniprot ID: Q5HT48
• Organism: Campylobacter jejuni strain BCH-10539
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1356747..1367754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8950_RS06975 (B10539_13800)	-	1358405..1359151 (-)	747	WP_317725298.1	autotransporter outer membrane beta-barrel domain-containing protein	-
R8950_RS06980 (B10539_13810)	-	1359200..1360072 (-)	873	WP_317725299.1	hypothetical protein	-
R8950_RS06985 (B10539_13820)	-	1360214..1360681 (-)	468	WP_002860417.1	hypothetical protein	-
R8950_RS06995 (B10539_13830)	-	1361246..1361656 (-)	411	WP_002783915.1	hypothetical protein	-
R8950_RS07000 (B10539_13840)	ruvB	1361747..1362754 (+)	1008	WP_002859650.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
R8950_RS07005 (B10539_13850)	amaA	1362758..1363801 (+)	1044	WP_060809759.1	AI-2E family transporter	-
R8950_RS07010 (B10539_13860)	fumC	1363831..1365222 (-)	1392	WP_002859652.1	class II fumarate hydratase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37295.85 Da
• Isoelectric Point: 4.9081

>NTDB_id=93236 R8950_RS07000 WP_002859650.1 1361747..1362754(+) (ruvB) [Campylobacter jejuni strain BCH-10539]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide

• Length: 1008 bp

>NTDB_id=93236 R8950_RS07000 WP_002859650.1 1361747..1362754(+) (ruvB) [Campylobacter jejuni strain BCH-10539]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCATCGCTTAAGTCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACGCGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTAATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACTCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGAGCTAATGAGGCCTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCCAAACAAAAACCTATCGGACTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (255-325)

3D structure

• AlphaFold DB: Q5HT48

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	69.461	99.701	0.693
ruvB	Bacillus subtilis subsp. subtilis str. 168	52.761	97.313	0.513
ruvB	Streptococcus pneumoniae TIGR4	48.632	98.209	0.478
ruvB	Streptococcus pneumoniae R6	48.632	98.209	0.478
ruvB	Streptococcus pneumoniae D39	48.632	98.209	0.478
ruvB	Synechocystis sp. PCC 6803	49.533	95.821	0.475