Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   VXF94_RS08930 Genome accession   NZ_CP143956
Coordinates   1751405..1752358 (-) Length   317 a.a.
NCBI ID   WP_013351008.1    Uniprot ID   A0AAP7N4J3
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1746405..1757358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS08910 (VXF94_08910) - 1747279..1748703 (+) 1425 WP_014469749.1 MDR family MFS transporter -
  VXF94_RS08915 (VXF94_08915) - 1748744..1749694 (-) 951 WP_014471436.1 siderophore ABC transporter substrate-binding protein -
  VXF94_RS08920 (VXF94_08920) - 1749716..1750474 (-) 759 WP_013351009.1 ABC transporter ATP-binding protein -
  VXF94_RS08925 (VXF94_08925) - 1750468..1751415 (-) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  VXF94_RS08930 (VXF94_08930) ceuB 1751405..1752358 (-) 954 WP_013351008.1 ABC transporter permease Machinery gene
  VXF94_RS08935 (VXF94_08935) - 1752772..1754136 (+) 1365 WP_014471434.1 aspartate kinase -
  VXF94_RS08940 (VXF94_08940) - 1754231..1754332 (+) 102 WP_013351006.1 YjcZ family sporulation protein -
  VXF94_RS08945 (VXF94_08945) phrC 1754480..1754599 (-) 120 WP_013351005.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  VXF94_RS08950 (VXF94_08950) rapC 1754583..1755731 (-) 1149 WP_013351004.1 tetratricopeptide repeat protein Regulator
  VXF94_RS08955 (VXF94_08955) - 1755890..1757317 (-) 1428 WP_161988189.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34975.26 Da        Isoelectric Point: 9.6741

>NTDB_id=932200 VXF94_RS08930 WP_013351008.1 1751405..1752358(-) (ceuB) [Bacillus amyloliquefaciens strain Fad 108]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQASTLFESRLPRLASIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=932200 VXF94_RS08930 WP_013351008.1 1751405..1752358(-) (ceuB) [Bacillus amyloliquefaciens strain Fad 108]
ATGAAGCTACGTTACTTACTTTTGTTACTGGCGGTATTGGCGTGTACTTCTATTTTTATCGGGGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAAGTACATTATTTGAAAGCCGGCTGCCGCGTCTGGCGAGCATTATTA
TTGCCGGCATGAGCCTGAGCATCTGCGGATTAATTATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCGAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
AATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTTAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCGTCTTGGCTTCAGGGGGATTTCTCATTGGTCGTTAAAGGCCGCTACGAGCTTTTATACCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAGTTTACGGTGGCTGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATCATTGTGTCGCTTATCGCTTCACTTGTGATTTTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCGAATATGGTGTCGATCTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTGTTAGGTGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATATTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTGATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533