Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | V3C05_RS06335 | Genome accession | NZ_CP143878 |
| Coordinates | 1347851..1348300 (-) | Length | 149 a.a. |
| NCBI ID | WP_266199913.1 | Uniprot ID | - |
| Organism | Pasteurella multocida subsp. multocida strain LH06 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1344914..1393434 | 1347851..1348300 | within | 0 |
Gene organization within MGE regions
Location: 1344914..1393434
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V3C05_RS06325 (V3C05_06325) | - | 1344914..1346434 (-) | 1521 | WP_010907418.1 | site-specific integrase | - |
| V3C05_RS06330 (V3C05_06330) | - | 1346421..1347701 (-) | 1281 | WP_016533798.1 | site-specific integrase | - |
| V3C05_RS06335 (V3C05_06335) | ssb | 1347851..1348300 (-) | 450 | WP_266199913.1 | single-stranded DNA-binding protein | Machinery gene |
| V3C05_RS06340 (V3C05_06340) | - | 1348300..1348959 (-) | 660 | WP_041423209.1 | translocation protein TolB precursor | - |
| V3C05_RS06345 (V3C05_06345) | - | 1348946..1349899 (-) | 954 | WP_014391451.1 | recombinase RecT | - |
| V3C05_RS06350 (V3C05_06350) | - | 1349901..1350188 (-) | 288 | WP_014391452.1 | hypothetical protein | - |
| V3C05_RS06355 (V3C05_06355) | - | 1350201..1350437 (-) | 237 | WP_330962019.1 | hypothetical protein | - |
| V3C05_RS06360 (V3C05_06360) | - | 1350409..1350708 (-) | 300 | WP_078802174.1 | hypothetical protein | - |
| V3C05_RS06365 (V3C05_06365) | - | 1350857..1351087 (+) | 231 | WP_223251317.1 | hypothetical protein | - |
| V3C05_RS06370 (V3C05_06370) | - | 1351149..1351760 (-) | 612 | WP_330962020.1 | KilA-N domain-containing protein | - |
| V3C05_RS06375 (V3C05_06375) | - | 1352034..1352576 (-) | 543 | WP_078737823.1 | DUF4760 domain-containing protein | - |
| V3C05_RS06385 (V3C05_06385) | - | 1353309..1353503 (+) | 195 | WP_078737822.1 | hypothetical protein | - |
| V3C05_RS06390 (V3C05_06390) | - | 1353484..1353654 (-) | 171 | WP_155295599.1 | hypothetical protein | - |
| V3C05_RS06395 (V3C05_06395) | - | 1353667..1353897 (-) | 231 | WP_078737821.1 | hypothetical protein | - |
| V3C05_RS06400 (V3C05_06400) | - | 1354356..1354670 (+) | 315 | WP_078819687.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| V3C05_RS06405 (V3C05_06405) | - | 1354667..1354957 (+) | 291 | WP_078819686.1 | addiction module antidote protein | - |
| V3C05_RS06410 (V3C05_06410) | - | 1354984..1355421 (-) | 438 | WP_078819883.1 | hypothetical protein | - |
| V3C05_RS06415 (V3C05_06415) | - | 1355418..1357262 (-) | 1845 | WP_071523830.1 | DEAD/DEAH box helicase | - |
| V3C05_RS06420 (V3C05_06420) | - | 1357473..1358150 (-) | 678 | WP_014390718.1 | XRE family transcriptional regulator | - |
| V3C05_RS06425 (V3C05_06425) | - | 1358274..1358471 (+) | 198 | WP_014390719.1 | helix-turn-helix domain-containing protein | - |
| V3C05_RS06430 (V3C05_06430) | - | 1358521..1358982 (+) | 462 | WP_078802159.1 | phage regulatory CII family protein | - |
| V3C05_RS06435 (V3C05_06435) | - | 1359043..1359726 (+) | 684 | WP_330962021.1 | phage antirepressor KilAC domain-containing protein | - |
| V3C05_RS06440 (V3C05_06440) | - | 1359811..1360629 (+) | 819 | WP_015691057.1 | hypothetical protein | - |
| V3C05_RS06445 (V3C05_06445) | - | 1360626..1361990 (+) | 1365 | WP_015691058.1 | replicative DNA helicase | - |
| V3C05_RS06450 (V3C05_06450) | - | 1361987..1362526 (+) | 540 | WP_078802161.1 | MT-A70 family methyltransferase | - |
| V3C05_RS06455 (V3C05_06455) | - | 1362536..1362886 (+) | 351 | WP_015691060.1 | hypothetical protein | - |
| V3C05_RS06460 (V3C05_06460) | - | 1362908..1363414 (+) | 507 | WP_015691061.1 | DUF1367 family protein | - |
| V3C05_RS06465 (V3C05_06465) | - | 1363499..1364149 (+) | 651 | WP_015691062.1 | metallophosphoesterase | - |
| V3C05_RS06470 (V3C05_06470) | - | 1364223..1364438 (+) | 216 | WP_078801821.1 | hypothetical protein | - |
| V3C05_RS06475 (V3C05_06475) | - | 1364431..1365033 (+) | 603 | WP_078801822.1 | recombination protein NinG | - |
| V3C05_RS06480 (V3C05_06480) | - | 1365035..1365496 (+) | 462 | WP_014391474.1 | antiterminator Q family protein | - |
| V3C05_RS06490 (V3C05_06490) | - | 1365823..1366083 (+) | 261 | WP_014391475.1 | HP1 family phage holin | - |
| V3C05_RS06495 (V3C05_06495) | - | 1366080..1366610 (+) | 531 | WP_078737811.1 | lysozyme | - |
| V3C05_RS06500 (V3C05_06500) | - | 1366583..1366906 (+) | 324 | WP_078801840.1 | DUF2570 family protein | - |
| V3C05_RS06505 (V3C05_06505) | - | 1367128..1367562 (-) | 435 | WP_014390736.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| V3C05_RS06510 (V3C05_06510) | - | 1367591..1367773 (-) | 183 | WP_016533497.1 | type II toxin-antitoxin system HicA family toxin | - |
| V3C05_RS06515 (V3C05_06515) | - | 1367856..1368353 (+) | 498 | WP_014390737.1 | terminase | - |
| V3C05_RS06520 (V3C05_06520) | - | 1368337..1369572 (+) | 1236 | WP_064964918.1 | PBSX family phage terminase large subunit | - |
| V3C05_RS06525 (V3C05_06525) | - | 1369582..1370985 (+) | 1404 | WP_078819653.1 | DUF4055 domain-containing protein | - |
| V3C05_RS06530 (V3C05_06530) | - | 1370963..1372576 (+) | 1614 | WP_240958866.1 | minor capsid protein | - |
| V3C05_RS06535 (V3C05_06535) | - | 1372579..1372797 (+) | 219 | WP_015691070.1 | hypothetical protein | - |
| V3C05_RS06540 (V3C05_06540) | - | 1372772..1373206 (+) | 435 | WP_015691071.1 | HD domain-containing protein | - |
| V3C05_RS06545 (V3C05_06545) | - | 1373246..1373413 (+) | 168 | WP_016533111.1 | hypothetical protein | - |
| V3C05_RS06550 (V3C05_06550) | - | 1373541..1374326 (+) | 786 | WP_064964916.1 | hypothetical protein | - |
| V3C05_RS06555 (V3C05_06555) | - | 1374344..1375501 (+) | 1158 | WP_078819654.1 | P22 phage major capsid protein family protein | - |
| V3C05_RS06560 (V3C05_06560) | - | 1375558..1375794 (+) | 237 | WP_064964914.1 | HeH/LEM domain-containing protein | - |
| V3C05_RS06565 (V3C05_06565) | - | 1375811..1376278 (+) | 468 | WP_078819655.1 | DnaT-like ssDNA-binding protein | - |
| V3C05_RS06570 (V3C05_06570) | - | 1376280..1376654 (+) | 375 | WP_016533106.1 | hypothetical protein | - |
| V3C05_RS06575 (V3C05_06575) | - | 1376656..1377057 (+) | 402 | WP_016533105.1 | HK97 gp10 family phage protein | - |
| V3C05_RS06580 (V3C05_06580) | - | 1377057..1377449 (+) | 393 | WP_015691079.1 | phage tail terminator-like protein | - |
| V3C05_RS06585 (V3C05_06585) | - | 1377462..1378478 (+) | 1017 | WP_078819656.1 | phage tail tube protein | - |
| V3C05_RS06590 (V3C05_06590) | - | 1378552..1378956 (+) | 405 | WP_005756587.1 | hypothetical protein | - |
| V3C05_RS06595 (V3C05_06595) | - | 1378965..1379294 (+) | 330 | WP_015691081.1 | hypothetical protein | - |
| V3C05_RS06600 (V3C05_06600) | - | 1379302..1379628 (+) | 327 | WP_015691082.1 | phage tail protein | - |
| V3C05_RS06605 (V3C05_06605) | - | 1379646..1382894 (+) | 3249 | WP_064964908.1 | tape measure protein | - |
| V3C05_RS06610 (V3C05_06610) | - | 1382891..1383595 (+) | 705 | WP_078802163.1 | phage minor tail protein L | - |
| V3C05_RS06615 (V3C05_06615) | - | 1383599..1384342 (+) | 744 | WP_016570177.1 | C40 family peptidase | - |
| V3C05_RS06620 (V3C05_06620) | - | 1384285..1384908 (+) | 624 | WP_016570176.1 | tail assembly protein | - |
| V3C05_RS06625 (V3C05_06625) | - | 1384912..1390812 (+) | 5901 | WP_330962022.1 | phage tail protein | - |
| V3C05_RS06630 (V3C05_06630) | - | 1390860..1391183 (+) | 324 | WP_014667801.1 | hypothetical protein | - |
| V3C05_RS06635 (V3C05_06635) | - | 1391609..1392445 (+) | 837 | WP_014390712.1 | KilA-N domain-containing protein | - |
| V3C05_RS06640 (V3C05_06640) | - | 1392748..1393434 (+) | 687 | WP_227486347.1 | KilA-N domain-containing protein | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 17024.90 Da Isoelectric Point: 6.9835
>NTDB_id=931647 V3C05_RS06335 WP_266199913.1 1347851..1348300(-) (ssb) [Pasteurella multocida subsp. multocida strain LH06]
MAGVNRVIILGNLGSDPEIRTMPNGDPVAKISVATSESWIDKNTNERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
KLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQQQQAQAPQNNAYANAKSGKPVQKFDNFEEDDIPF
MAGVNRVIILGNLGSDPEIRTMPNGDPVAKISVATSESWIDKNTNERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
KLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQQQQAQAPQNNAYANAKSGKPVQKFDNFEEDDIPF
Nucleotide
Download Length: 450 bp
>NTDB_id=931647 V3C05_RS06335 WP_266199913.1 1347851..1348300(-) (ssb) [Pasteurella multocida subsp. multocida strain LH06]
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAGCGATCCTGAAATCCGCACAATGCCAAATGGCGACCC
TGTGGCAAAAATCAGTGTGGCCACAAGTGAAAGCTGGATTGATAAAAACACAAACGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGGCAGTATTTGAAGAAAGGCTCGAAAGTTTATGTGGAAGGT
AAGCTCAGAACACGCAAATGGCAAGATCAAAATGGTCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAGCAACAGCAAGCACAGGCACCACAAAATAATGCTTATGCGAATGCGAAAAGTGGAA
AACCAGTGCAGAAGTTTGATAATTTTGAAGAAGACGATATACCGTTTTGA
ATGGCTGGGGTTAATCGTGTAATTATTTTAGGAAATTTAGGAAGCGATCCTGAAATCCGCACAATGCCAAATGGCGACCC
TGTGGCAAAAATCAGTGTGGCCACAAGTGAAAGCTGGATTGATAAAAACACAAACGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGGCAGTATTTGAAGAAAGGCTCGAAAGTTTATGTGGAAGGT
AAGCTCAGAACACGCAAATGGCAAGATCAAAATGGTCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAGCAACAGCAAGCACAGGCACCACAAAATAATGCTTATGCGAATGCGAAAAGTGGAA
AACCAGTGCAGAAGTTTGATAATTTTGAAGAAGACGATATACCGTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
61.878 |
100 |
0.752 |
| ssb | Vibrio cholerae strain A1552 |
52.518 |
93.289 |
0.49 |
| ssb | Neisseria meningitidis MC58 |
39.548 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
43.796 |
91.946 |
0.403 |