Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   U6C02_RS19020 Genome accession   NZ_CP143843
Coordinates   3822125..3823078 (-) Length   317 a.a.
NCBI ID   WP_003155063.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3817125..3828078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS18990 (U6C02_18990) - 3817277..3818263 (-) 987 WP_003155054.1 ABC transporter ATP-binding protein -
  U6C02_RS18995 (U6C02_18995) - 3818437..3819222 (-) 786 WP_012117278.1 DUF2268 domain-containing protein -
  U6C02_RS19000 (U6C02_19000) fabF 3819306..3820544 (-) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  U6C02_RS19005 (U6C02_19005) - 3820567..3821505 (-) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  U6C02_RS19010 (U6C02_19010) - 3821673..3821891 (+) 219 WP_003155059.1 hypothetical protein -
  U6C02_RS19015 (U6C02_19015) comZ 3821921..3822112 (-) 192 WP_003155061.1 ComZ family protein Regulator
  U6C02_RS19020 (U6C02_19020) med 3822125..3823078 (-) 954 WP_003155063.1 BMP family ABC transporter substrate-binding protein Regulator
  U6C02_RS19025 (U6C02_19025) - 3823168..3823734 (-) 567 WP_032857790.1 hypothetical protein -
  U6C02_RS19030 (U6C02_19030) - 3823817..3824551 (-) 735 WP_014304780.1 hypothetical protein -
  U6C02_RS19035 (U6C02_19035) - 3824812..3824997 (+) 186 WP_003155069.1 YjzD family protein -
  U6C02_RS19040 (U6C02_19040) - 3825033..3825212 (-) 180 WP_003155070.1 YjzC family protein -
  U6C02_RS19045 (U6C02_19045) argF 3825288..3826259 (-) 972 WP_032857787.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35345.94 Da        Isoelectric Point: 4.5594

>NTDB_id=931548 U6C02_RS19020 WP_003155063.1 3822125..3823078(-) (med) [Bacillus velezensis strain YM-3]
MITRLVMIFSVLLLLSGCTQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=931548 U6C02_RS19020 WP_003155063.1 3822125..3823078(-) (med) [Bacillus velezensis strain YM-3]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCACACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTCCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTCGGTGTCATCGCCTCTTTTCTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACAGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAATCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785