Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   U6C02_RS19375 Genome accession   NZ_CP143843
Coordinates   3888890..3889468 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain YM-3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3883890..3894468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS19335 (U6C02_19335) - 3884132..3884491 (+) 360 WP_012117241.1 hypothetical protein -
  U6C02_RS19340 (U6C02_19340) - 3884612..3884812 (+) 201 WP_003155162.1 DUF3311 domain-containing protein -
  U6C02_RS19345 (U6C02_19345) - 3884809..3886278 (+) 1470 WP_025852048.1 sodium:solute symporter family protein -
  U6C02_RS19350 (U6C02_19350) - 3886319..3886636 (+) 318 WP_025852049.1 YbjQ family protein -
  U6C02_RS19355 (U6C02_19355) - 3886669..3886938 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  U6C02_RS19360 (U6C02_19360) - 3887134..3887844 (+) 711 WP_003155170.1 YrpD family protein -
  U6C02_RS19365 (U6C02_19365) - 3887979..3888350 (-) 372 WP_003155172.1 iron chaperone -
  U6C02_RS19370 (U6C02_19370) - 3888377..3888745 (-) 369 Protein_3756 iron chaperone -
  U6C02_RS19375 (U6C02_19375) comK 3888890..3889468 (-) 579 WP_003155179.1 competence protein ComK Regulator
  U6C02_RS19380 (U6C02_19380) - 3889784..3890017 (+) 234 WP_003155181.1 IDEAL domain-containing protein -
  U6C02_RS19385 (U6C02_19385) - 3890048..3890905 (-) 858 WP_007610477.1 SDR family oxidoreductase -
  U6C02_RS19390 (U6C02_19390) - 3891030..3892553 (+) 1524 WP_025852060.1 FAD-dependent oxidoreductase -
  U6C02_RS19850 - 3892469..3893209 (+) 741 Protein_3761 protoglobin domain-containing protein -
  U6C02_RS19855 - 3893453..3893968 (+) 516 WP_369719112.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=931551 U6C02_RS19375 WP_003155179.1 3888890..3889468(-) (comK) [Bacillus velezensis strain YM-3]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=931551 U6C02_RS19375 WP_003155179.1 3888890..3889468(-) (comK) [Bacillus velezensis strain YM-3]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823