Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   U6C02_RS14020 Genome accession   NZ_CP143843
Coordinates   2728221..2728829 (-) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2723221..2733829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS14000 (U6C02_14000) dnaD 2723457..2724155 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  U6C02_RS14005 (U6C02_14005) nth 2724174..2724833 (+) 660 WP_094247837.1 endonuclease III -
  U6C02_RS14010 (U6C02_14010) - 2724830..2725321 (+) 492 WP_101562220.1 YpoC family protein -
  U6C02_RS14015 (U6C02_14015) - 2725399..2728182 (-) 2784 WP_101562219.1 PBP1A family penicillin-binding protein -
  U6C02_RS14020 (U6C02_14020) recU 2728221..2728829 (-) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  U6C02_RS14025 (U6C02_14025) - 2728871..2729833 (+) 963 WP_032861546.1 DUF2515 domain-containing protein -
  U6C02_RS14030 (U6C02_14030) sspM 2729877..2729981 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  U6C02_RS14035 (U6C02_14035) - 2730187..2730432 (+) 246 WP_039063257.1 DUF5446 family protein -
  U6C02_RS14040 (U6C02_14040) - 2730478..2730846 (+) 369 WP_070082017.1 YppE family protein -
  U6C02_RS14045 (U6C02_14045) - 2730885..2731067 (-) 183 WP_003153532.1 YppF family protein -
  U6C02_RS14050 (U6C02_14050) - 2731254..2731688 (+) 435 WP_101562217.1 YppG family protein -
  U6C02_RS14055 (U6C02_14055) - 2731718..2732131 (-) 414 WP_070082015.1 Hsp20/alpha crystallin family protein -
  U6C02_RS14060 (U6C02_14060) - 2732270..2732776 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=931532 U6C02_RS14020 WP_003153521.1 2728221..2728829(-) (recU) [Bacillus velezensis strain YM-3]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=931532 U6C02_RS14020 WP_003153521.1 2728221..2728829(-) (recU) [Bacillus velezensis strain YM-3]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896