Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   U6C02_RS05330 Genome accession   NZ_CP143843
Coordinates   1016792..1017310 (+) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain YM-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1011792..1022310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS05310 (U6C02_05310) - 1012870..1013076 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  U6C02_RS05315 (U6C02_05315) - 1013123..1015126 (+) 2004 WP_025854037.1 molybdopterin-dependent oxidoreductase -
  U6C02_RS05320 (U6C02_05320) ychF 1015253..1016353 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  U6C02_RS05325 (U6C02_05325) rpsF 1016465..1016752 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  U6C02_RS05330 (U6C02_05330) ssbA 1016792..1017310 (+) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  U6C02_RS05335 (U6C02_05335) rpsR 1017354..1017593 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  U6C02_RS05340 (U6C02_05340) - 1017782..1018363 (+) 582 WP_025854038.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  U6C02_RS05345 (U6C02_05345) - 1018360..1018917 (+) 558 WP_025854039.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  U6C02_RS05350 (U6C02_05350) xth 1018914..1019672 (+) 759 WP_025854040.1 exodeoxyribonuclease III -
  U6C02_RS05355 (U6C02_05355) - 1019735..1020673 (+) 939 WP_032858562.1 LacI family DNA-binding transcriptional regulator -
  U6C02_RS05360 (U6C02_05360) - 1020729..1021109 (+) 381 WP_004392999.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=931494 U6C02_RS05330 WP_004392979.1 1016792..1017310(+) (ssbA) [Bacillus velezensis strain YM-3]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=931494 U6C02_RS05330 WP_004392979.1 1016792..1017310(+) (ssbA) [Bacillus velezensis strain YM-3]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTCCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378