Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   R8612_RS02075 Genome accession   NZ_AP028351
Coordinates   423377..424387 (-) Length   336 a.a.
NCBI ID   WP_002777794.1    Uniprot ID   A0ABP2NSK5
Organism   Campylobacter coli strain BCH-10460     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 418377..429387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8612_RS02060 (B10460_04020) glmS 418955..420751 (+) 1797 WP_002777801.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  R8612_RS02065 (B10460_04030) fumC 420886..422277 (+) 1392 WP_317647443.1 class II fumarate hydratase -
  R8612_RS02070 (B10460_04040) - 422324..423367 (-) 1044 WP_002789620.1 AI-2E family transporter -
  R8612_RS02075 (B10460_04050) ruvB 423377..424387 (-) 1011 WP_002777794.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R8612_RS02080 (B10460_04060) - 424479..424889 (+) 411 WP_002783915.1 hypothetical protein -
  R8612_RS02090 (B10460_04070) - 425454..427721 (+) 2268 WP_052784786.1 autotransporter domain-containing protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37570.98 Da        Isoelectric Point: 4.7834

>NTDB_id=93120 R8612_RS02075 WP_002777794.1 423377..424387(-) (ruvB) [Campylobacter coli strain BCH-10460]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQENIKKNLNVFISAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDEELAIILQKAALKLNKSCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETIT
KERAKEALNSLGVNELGFDAMDLRYLELLTEAKRKPIGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKS
FSVLKLNYEQTLFDEN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=93120 R8612_RS02075 WP_002777794.1 423377..424387(-) (ruvB) [Campylobacter coli strain BCH-10460]
ATGGATAGAATAGTAGAAATAGAAAAATATTCTTTTGACGAAACTTATGAAACTTCTCTGCGTCCTTCAAATTTCGATGG
CTACATAGGACAAGAAAACATTAAAAAAAATTTAAATGTTTTTATTAGCGCTGCAAAAAAAAGAAATGAATGCTTAGACC
ATATACTTTTTAGTGGGCCTGCAGGACTTGGCAAAACTACATTAGCTAATATTATTTCTTATGAGATGGGTGCAAATATC
AAAACAACTGCGGCTCCTATGATAGAAAAAAGCGGGGATTTGGCTGCAATTTTAACCAATTTAAGCGAAGGAGATGTGCT
TTTTATCGATGAAATTCATCGCTTAAGCCCTGCTATTGAAGAAGTACTTTACCCTGCAATGGAAGATTATAGGCTAGATA
TCATCATCGGTAGTGGCCCTGCAGCACAAACTATAAAAATCGATTTGCCTAAATTTACACTTATTGGCGCTACAACCCGT
GCAGGAATGCTTAGCAATCCTTTAAGAGATCGTTTTGGAATGCAATTTAGACTTGAATTTTATAAAGATGAAGAGCTTGC
TATCATACTTCAAAAAGCTGCACTAAAGCTCAATAAAAGCTGTGAAAATGAAGCTGCACTTGAGATTGCCAAAAGAAGTC
GCTCTACTCCTAGAATCGCACTTAGACTTTTAAAAAGAGTGAGAGATTTTGCAGATGTAAATGACGAAGAAACGATCACC
AAAGAAAGGGCTAAAGAAGCATTAAATTCTTTAGGTGTCAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTAGA
GCTTTTAACAGAGGCTAAAAGAAAGCCTATAGGACTTTCTAGTATAGCGGCAGCTTTGAGTGAAGATGAAAATACTATTG
AAGATGTAATCGAACCTTATTTGCTTGCAAATGGCTACATAGAACGCACTGCCAAAGGTCGTATAGCAAGTACAAAAAGT
TTTAGTGTACTTAAGCTTAATTACGAACAAACTTTATTTGATGAAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

68.862

99.405

0.685
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.374

97.024

0.518
  ruvB Streptococcus pneumoniae TIGR4

48.338

98.512

0.476
  ruvB Streptococcus pneumoniae R6

48.338

98.512

0.476
  ruvB Streptococcus pneumoniae D39

48.338

98.512

0.476
  ruvB Synechocystis sp. PCC 6803

49.841

93.75

0.467