Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   ACB343_RS08195 Genome accession   NZ_CP167012
Coordinates   1620138..1620617 (-) Length   159 a.a.
NCBI ID   WP_011285164.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 17     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1615138..1625617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB343_RS08175 (ACB343_08175) - 1615307..1615912 (-) 606 WP_011285160.1 response regulator transcription factor -
  ACB343_RS08180 (ACB343_08180) - 1615893..1617455 (-) 1563 WP_011285161.1 ATP-binding protein -
  ACB343_RS08185 (ACB343_08185) - 1617495..1619402 (-) 1908 WP_011285162.1 FtsX-like permease family protein -
  ACB343_RS08190 (ACB343_08190) - 1619404..1620141 (-) 738 WP_011285163.1 ABC transporter ATP-binding protein -
  ACB343_RS08195 (ACB343_08195) comA/nlmT 1620138..1620617 (-) 480 WP_011285164.1 ABC transporter ATP-binding protein Regulator
  ACB343_RS08200 (ACB343_08200) - 1620673..1622298 (-) 1626 WP_011285165.1 DUF4135 domain-containing protein -
  ACB343_RS08205 (ACB343_08205) - 1622380..1622535 (-) 156 WP_002982773.1 type A2 lanthipeptide -
  ACB343_RS08210 (ACB343_08210) lacG 1623038..1624444 (-) 1407 WP_011285166.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18490.13 Da        Isoelectric Point: 6.6371

>NTDB_id=930760 ACB343_RS08195 WP_011285164.1 1620138..1620617(-) (comA/nlmT) [Streptococcus pyogenes strain Isolate 17]
MFDGDVMYNISLGRESVSGEQVIETCKRVSIYDDIRSMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPT
SALDVKTERIIQKNVEALHCTRILVTHRLNTVEKADKILIMDNGKIIDYGNHHYLYKNNKDYCDLYDSYMNKYQEEEVK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=930760 ACB343_RS08195 WP_011285164.1 1620138..1620617(-) (comA/nlmT) [Streptococcus pyogenes strain Isolate 17]
ATGTTTGATGGGGATGTGATGTATAACATTTCGCTAGGGAGAGAATCTGTTTCAGGAGAACAGGTTATTGAAACTTGTAA
AAGGGTATCAATATATGATGATATCAGGAGTATGCCAATGAAGTTTCATACCCCACTTTTTCGAGATAATCCATCACTAT
CTGGGGGGCAAAAACAACGAATTTCTTTAGCAAGAGAACTTGTAACCACCCCTAGAATCTTAGTTCTTGACGAACCTACA
TCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGATTTTGGTTACCCA
TAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGCAAAATTATTGACTATGGAAACCATCATT
ATTTGTACAAAAATAATAAGGATTATTGTGACTTATATGACTCGTATATGAATAAATATCAGGAGGAAGAGGTAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(28-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

40.94

93.711

0.384
  rcrQ Streptococcus mutans UA159

37.975

99.371

0.377
  comA Streptococcus mitis NCTC 12261

39.597

93.711

0.371
  comA Streptococcus pneumoniae D39

38.926

93.711

0.365
  comA Streptococcus pneumoniae R6

38.926

93.711

0.365
  comA Streptococcus mitis SK321

38.926

93.711

0.365
  comA Streptococcus pneumoniae Rx1

38.926

93.711

0.365
  comA Streptococcus pneumoniae TIGR4

38.926

93.711

0.365