Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACB352_RS00675 Genome accession   NZ_CP167009
Coordinates   103554..103982 (+) Length   142 a.a.
NCBI ID   WP_002986548.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 98554..108982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB352_RS00655 (ACB352_00655) - 100885..101250 (+) 366 WP_002986560.1 DUF1033 family protein -
  ACB352_RS00660 (ACB352_00660) comGA 101343..102281 (+) 939 WP_011284420.1 competence type IV pilus ATPase ComGA Machinery gene
  ACB352_RS00665 (ACB352_00665) comGB 102217..103251 (+) 1035 WP_227868694.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACB352_RS00670 (ACB352_00670) comGC 103253..103579 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  ACB352_RS00675 (ACB352_00675) comGD 103554..103982 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACB352_RS00680 (ACB352_00680) comGE 103939..104223 (+) 285 WP_011284422.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACB352_RS00685 (ACB352_00685) comGF 104216..104650 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACB352_RS00690 (ACB352_00690) comGG 104634..104960 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  ACB352_RS00695 (ACB352_00695) comGH 105058..106011 (+) 954 WP_010921802.1 class I SAM-dependent methyltransferase Machinery gene
  ACB352_RS00700 (ACB352_00700) - 106070..107266 (+) 1197 WP_011284424.1 acetate kinase -
  ACB352_RS00705 (ACB352_00705) - 107453..107761 (+) 309 WP_011284425.1 hypothetical protein -
  ACB352_RS00710 (ACB352_00710) proC 107844..108614 (-) 771 WP_011284426.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16310.04 Da        Isoelectric Point: 10.3481

>NTDB_id=930407 ACB352_RS00675 WP_002986548.1 103554..103982(+) (comGD) [Streptococcus pyogenes strain Isolate 22]
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTE
GNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=930407 ACB352_RS00675 WP_002986548.1 103554..103982(+) (comGD) [Streptococcus pyogenes strain Isolate 22]
ATGAAAAAGCCCGTCTTAGCAATTAAAGCTTTTACTTTGCTTGAAACTTTACTAAGTTTGTCAGTGATGAGTTTCATTAT
ATTGGGATTGTCTGTACCAGTGACAAAAAGCTATCAAAAAGTAGAAGAGCATCTGTTTTTTAGCCATTTTGAACATTTGT
ATCGACATCAGCAAAAGTTAGCCATATTACAGCAAAAACAGCGCGTCTTGGATATTTCTTCAACAAAAATTGTTACAGAA
GGTAATAGCCTAACAGTTCCTAAATCAATAACAGTGAATCATCCTTATCGGTTAGTTATTGATCAGATGGGAGGCAACCA
TTCCTTAGCTAAAATTATTTTTGACATGACTGATCGACGCTTTAAATACCAATTTTATCTAGGGAGTGGGAATTATCAAA
AAACAAGTCAAAGCTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

40.441

95.775

0.387
  comGD Streptococcus gordonii str. Challis substr. CH1

40.458

92.254

0.373
  comGD/cglD Streptococcus mitis SK321

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae Rx1

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae D39

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae R6

39.695

92.254

0.366