Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   U4D55_RS10515 Genome accession   NZ_CP143641
Coordinates   2134526..2135110 (+) Length   194 a.a.
NCBI ID   WP_011276196.1    Uniprot ID   A0A2A1KAP4
Organism   Staphylococcus haemolyticus strain M62.3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2129526..2140110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4D55_RS10485 (U4D55_10485) - 2130282..2131649 (-) 1368 WP_016931373.1 isochorismate synthase -
  U4D55_RS10490 (U4D55_10490) - 2131829..2132767 (+) 939 WP_316083484.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  U4D55_RS10495 (U4D55_10495) - 2132866..2133420 (-) 555 WP_016931371.1 GNAT family N-acetyltransferase -
  U4D55_RS10500 (U4D55_10500) - 2133607..2133837 (+) 231 WP_011276193.1 NINE protein -
  U4D55_RS10505 (U4D55_10505) - 2133916..2134017 (+) 102 WP_011276194.1 SAR1012 family small protein -
  U4D55_RS10510 (U4D55_10510) - 2134094..2134312 (-) 219 WP_011276195.1 IDEAL domain-containing protein -
  U4D55_RS10515 (U4D55_10515) comK/comK1 2134526..2135110 (+) 585 WP_011276196.1 competence protein ComK Regulator
  U4D55_RS10530 (U4D55_10530) - 2136023..2136145 (+) 123 WP_255201521.1 hypothetical protein -
  U4D55_RS12630 - 2136158..2136349 (+) 192 Protein_2026 PH domain-containing protein -
  U4D55_RS12635 - 2136446..2136532 (+) 87 WP_256096978.1 SHOCT domain-containing protein -
  U4D55_RS10545 (U4D55_10545) - 2136567..2137142 (+) 576 WP_037557772.1 hypothetical protein -
  U4D55_RS10550 (U4D55_10550) - 2137230..2137313 (+) 84 WP_227528431.1 Ltp family lipoprotein -
  U4D55_RS10555 (U4D55_10555) - 2137361..2138350 (-) 990 WP_316083483.1 lipoate--protein ligase -
  U4D55_RS10560 (U4D55_10560) - 2138551..2138727 (+) 177 WP_011276202.1 YkvS family protein -
  U4D55_RS10565 (U4D55_10565) - 2138744..2139346 (+) 603 WP_011276203.1 type II CAAX prenyl endopeptidase Rce1 family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 23002.43 Da        Isoelectric Point: 9.2942

>NTDB_id=930220 U4D55_RS10515 WP_011276196.1 2134526..2135110(+) (comK/comK1) [Staphylococcus haemolyticus strain M62.3]
MTNISQSQNTVYIIRKGDMIIKPVIDDYEQTKGSEIWKYDSTIVSSPFKTQKIVERSCKFYGNSYISKKSETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENMWINMHYVHEIKPLKNRKCKIIFANHQTLTLNVSYHSIWHQYSNCIFYYYMVDKQ
SRMKSNNPEMPIDYEKTTLNIFEALSHYSLLQDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=930220 U4D55_RS10515 WP_011276196.1 2134526..2135110(+) (comK/comK1) [Staphylococcus haemolyticus strain M62.3]
ATGACAAATATTTCTCAAAGCCAAAATACTGTATATATTATTCGAAAAGGAGATATGATAATCAAACCCGTCATTGATGA
TTATGAGCAAACAAAAGGATCAGAAATATGGAAATATGATTCCACAATAGTTTCAAGCCCATTCAAAACTCAAAAAATCG
TCGAACGCTCATGTAAATTTTATGGTAATAGCTATATTAGTAAGAAATCCGAAACACAACGAATTGCCGGCATTACTAGT
AAACCACCTATTTTATTGACTCCTCTCTTCCCCACTTATTTTTTCCCTACACATTCAGACCGTTTAGAAGAAAACATGTG
GATTAATATGCATTATGTACATGAAATTAAACCTCTTAAAAATCGAAAATGTAAAATTATTTTTGCAAATCATCAAACAT
TAACACTTAATGTTTCCTACCACAGTATTTGGCACCAATACTCTAACTGCATTTTTTATTATTACATGGTCGATAAACAA
TCTCGTATGAAGTCAAACAATCCAGAAATGCCAATAGATTATGAGAAAACGACTTTAAATATTTTCGAAGCACTTTCACA
TTATTCACTATTACAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1KAP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

68.617

96.907

0.665
  comK/comK1 Staphylococcus aureus N315

68.617

96.907

0.665