Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U4D54_RS12565 Genome accession   NZ_CP143639
Coordinates   2567869..2568915 (+) Length   348 a.a.
NCBI ID   WP_011275914.1    Uniprot ID   A0A2A1KBT9
Organism   Staphylococcus haemolyticus strain M81.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2562869..2573915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4D54_RS12540 (U4D54_12540) ymfI 2563665..2564369 (+) 705 WP_011275919.1 elongation factor P 5-aminopentanone reductase -
  U4D54_RS12545 (U4D54_12545) - 2564543..2565373 (+) 831 WP_016930681.1 YmfK family protein -
  U4D54_RS12550 (U4D54_12550) - 2565395..2565787 (+) 393 WP_033080070.1 helix-turn-helix domain-containing protein -
  U4D54_RS12555 (U4D54_12555) pgsA 2565821..2566396 (+) 576 WP_011275916.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  U4D54_RS12560 (U4D54_12560) - 2566551..2567693 (+) 1143 WP_316054279.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  U4D54_RS12565 (U4D54_12565) recA 2567869..2568915 (+) 1047 WP_011275914.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37781.73 Da        Isoelectric Point: 5.0065

>NTDB_id=930190 U4D54_RS12565 WP_011275914.1 2567869..2568915(+) (recA) [Staphylococcus haemolyticus strain M81.1]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGEVIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQVKEEIDR
KLREKLGIFDGDVDEKEEDAPQTLFVEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=930190 U4D54_RS12565 WP_011275914.1 2567869..2568915(+) (recA) [Staphylococcus haemolyticus strain M81.1]
TTGGATAATGATCGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAAAAATCATTCGGTAAAGGTGCCGTTATGAA
ACTAGGCGATAATAAAGGACGCCGTGTTTCAAGTGTTTCAAGTGGTTCAGTTACATTAGATAACGCATTAGGTGTAGGTG
GCTATCCTAAAGGTAGAATTATAGAGATTTATGGACCTGAAAGTTCTGGTAAAACAACAGTAGCTTTACATGCTATTGCA
GAGGTACAAAAGAACGGTGGCGTTGCTGCATTTATCGACGCTGAACACGCGCTTGATCCGGTATATGCAGAAGCATTAGG
TGTAGATATTGATAATTTATATCTATCACAACCAGACCATGGTGAACAAGGTTTAGAGATTGCTGAAGCTTTCGTTCGAA
GTGGTGCGGTTGATATTGTAGTAGTTGACTCTGTTGCCGCATTAACACCTAAAGCGGAAATTGAAGGTGAAATGGGCGAT
ACGCATGTAGGACTTCAAGCTCGCTTAATGTCACAGGCGTTACGTAAATTATCTGGTGCAATTTCAAAATCAAATACAAC
AGCTATTTTCATTAACCAAATTCGTGAAAAAGTTGGTGTAATGTTTGGTAACCCAGAAACTACACCTGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTTCGTCGTGCTGAGCAGTTAAAACAAGGCCAAGAAATTGTTGGTAACAGA
ACTAAAATTAAAGTTGTCAAAAACAAAGTTGCACCGCCTTTTAGAGTCGCTGAAGTAGATATTATGTATGGTCAAGGTAT
CTCTAAAGAAGGTGAAGTGATTGATCTTGGTGTTGAAAATGACATCGTAGATAAATCAGGTGCATGGTACTCATATAATG
GTGATCGAATGGGTCAAGGTAAAGAGAATGTAAAAACATATCTCAAAGAAAATCCTCAAGTTAAAGAAGAAATCGATCGT
AAGTTACGAGAAAAACTAGGTATTTTCGATGGAGATGTTGATGAAAAAGAAGAAGATGCACCTCAAACATTATTCGTTGA
AGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1KBT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.678

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

70.088

97.989

0.687
  recA Streptococcus pyogenes NZ131

68.389

94.54

0.647
  recA Streptococcus mitis NCTC 12261

63.818

100

0.644
  recA Acinetobacter baumannii D1279779

63.977

99.713

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.689

99.713

0.635
  recA Neisseria gonorrhoeae MS11

63.689

99.713

0.635
  recA Neisseria gonorrhoeae MS11

63.689

99.713

0.635
  recA Streptococcus pneumoniae R6

66.066

95.69

0.632
  recA Streptococcus pneumoniae Rx1

66.066

95.69

0.632
  recA Streptococcus pneumoniae D39

66.066

95.69

0.632
  recA Streptococcus pneumoniae TIGR4

66.066

95.69

0.632
  recA Streptococcus mitis SK321

66.066

95.69

0.632
  recA Streptococcus mutans UA159

63.953

98.851

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.412

97.701

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.861

95.115

0.626
  recA Acinetobacter baylyi ADP1

66.258

93.678

0.621
  recA Helicobacter pylori 26695

65.549

94.253

0.618
  recA Helicobacter pylori strain NCTC11637

65.244

94.253

0.615
  recA Vibrio cholerae strain A1552

65.031

93.678

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

93.678

0.609
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.943

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

95.115

0.589
  recA Pseudomonas stutzeri DSM 10701

62.27

93.678

0.583
  recA Glaesserella parasuis strain SC1401

60.991

92.816

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.129

91.667

0.56