Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VYI69_RS24785 Genome accession   NZ_CP143576
Coordinates   5460866..5461384 (-) Length   172 a.a.
NCBI ID   WP_003210042.1    Uniprot ID   A0A1R0G976
Organism   Pseudomonas yamanorum strain SFB8.6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5455866..5466384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI69_RS24760 (VYI69_24760) - 5456080..5457189 (-) 1110 WP_330564681.1 DUF3182 family protein -
  VYI69_RS24765 (VYI69_24765) - 5457361..5458341 (-) 981 WP_177072000.1 GlxA family transcriptional regulator -
  VYI69_RS24770 (VYI69_24770) - 5458437..5458988 (+) 552 WP_177071999.1 cysteine hydrolase family protein -
  VYI69_RS24775 (VYI69_24775) tam 5459001..5459762 (-) 762 WP_017476312.1 trans-aconitate 2-methyltransferase -
  VYI69_RS24780 (VYI69_24780) - 5459867..5460775 (+) 909 WP_063026819.1 LysR family transcriptional regulator -
  VYI69_RS24785 (VYI69_24785) ssb 5460866..5461384 (-) 519 WP_003210042.1 single-stranded DNA-binding protein Machinery gene
  VYI69_RS24790 (VYI69_24790) - 5461394..5462788 (-) 1395 WP_017476314.1 MFS transporter -
  VYI69_RS24795 (VYI69_24795) uvrA 5462967..5465801 (+) 2835 WP_010174605.1 excinuclease ABC subunit UvrA -
  VYI69_RS24800 (VYI69_24800) bfr 5465870..5466334 (-) 465 WP_003210048.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19131.30 Da        Isoelectric Point: 5.9455

>NTDB_id=929795 VYI69_RS24785 WP_003210042.1 5460866..5461384(-) (ssb) [Pseudomonas yamanorum strain SFB8.6]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQQSRPQPTQQPQRESRPAPQQAAPQPA
ADFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=929795 VYI69_RS24785 WP_003210042.1 5460866..5461384(-) (ssb) [Pseudomonas yamanorum strain SFB8.6]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGCAGTCCCGTCCGCAGCCGACCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCTCAGCCGGCA
GCCGACTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R0G976

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.218

100

0.616
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.5
  ssb Neisseria meningitidis MC58

46.961

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.494