Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V2I71_RS26880 Genome accession   NZ_CP143575
Coordinates   5612521..5613045 (-) Length   174 a.a.
NCBI ID   WP_057278276.1    Uniprot ID   A0A9X9ETF0
Organism   Peribacillus frigoritolerans strain GR2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5607521..5618045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I71_RS26860 (V2I71_26860) rplI 5608601..5609050 (-) 450 WP_258249520.1 50S ribosomal protein L9 -
  V2I71_RS26865 (V2I71_26865) - 5609047..5611017 (-) 1971 WP_053536992.1 DHH family phosphoesterase -
  V2I71_RS26870 (V2I71_26870) - 5611059..5612006 (-) 948 WP_057278275.1 YybS family protein -
  V2I71_RS26875 (V2I71_26875) rpsR 5612233..5612472 (-) 240 WP_053348323.1 30S ribosomal protein S18 -
  V2I71_RS26880 (V2I71_26880) ssbA 5612521..5613045 (-) 525 WP_057278276.1 single-stranded DNA-binding protein Machinery gene
  V2I71_RS26885 (V2I71_26885) rpsF 5613115..5613399 (-) 285 WP_034316153.1 30S ribosomal protein S6 -
  V2I71_RS26890 (V2I71_26890) ychF 5613594..5614694 (-) 1101 WP_034316156.1 redox-regulated ATPase YchF -
  V2I71_RS26895 (V2I71_26895) - 5614861..5615058 (-) 198 WP_034316158.1 DUF951 domain-containing protein -
  V2I71_RS26900 (V2I71_26900) - 5615079..5615915 (-) 837 WP_098185079.1 mechanosensitive ion channel family protein -
  V2I71_RS26905 (V2I71_26905) yyaC 5616286..5616921 (+) 636 WP_330501928.1 spore protease YyaC -
  V2I71_RS26910 (V2I71_26910) - 5616970..5617671 (-) 702 WP_057278279.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19304.00 Da        Isoelectric Point: 4.8282

>NTDB_id=929779 V2I71_RS26880 WP_057278276.1 5612521..5613045(-) (ssbA) [Peribacillus frigoritolerans strain GR2]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYGNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPFAN
DGKTIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=929779 V2I71_RS26880 WP_057278276.1 5612521..5613045(-) (ssbA) [Peribacillus frigoritolerans strain GR2]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTCAACCGTAGTTTTACGAATCAGCAAGGTGAACGTGAAGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGAGGTCAAAGAAGTTATGGTAATAACGGAAATGACAACA
ATTCGTATGGACAAAATCCTAATCAGAATCAACGAAGCAATAACAACTACACTCGTGTAGATGATGATCCATTTGCAAAT
GACGGTAAAACAATCGACATTTCAGATGACGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.492

100

0.707
  ssb Latilactobacillus sakei subsp. sakei 23K

56.497

100

0.575
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.92

0.379
  ssb Glaesserella parasuis strain SC1401

35.326

100

0.374