Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   V1M48_RS25610 Genome accession   NZ_CP143559
Coordinates   3378792..3379517 (+) Length   241 a.a.
NCBI ID   WP_050907059.1    Uniprot ID   -
Organism   Vibrio harveyi strain WHSS0915     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3373792..3384517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1M48_RS25595 (V1M48_25595) - 3374916..3377237 (+) 2322 WP_258455677.1 Tex family protein -
  V1M48_RS25600 (V1M48_25600) - 3377342..3377806 (-) 465 WP_009698973.1 hypothetical protein -
  V1M48_RS25605 (V1M48_25605) bioH 3377943..3378707 (-) 765 WP_330472335.1 pimeloyl-ACP methyl ester esterase BioH -
  V1M48_RS25610 (V1M48_25610) comF 3378792..3379517 (+) 726 WP_050907059.1 ComF family protein Machinery gene
  V1M48_RS25615 (V1M48_25615) nfuA 3379615..3380199 (+) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  V1M48_RS25620 (V1M48_25620) nudE 3380375..3380941 (+) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  V1M48_RS25625 (V1M48_25625) cysQ 3380989..3381816 (+) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  V1M48_RS25630 (V1M48_25630) - 3382106..3382867 (-) 762 WP_005448490.1 type II secretion system protein N -
  V1M48_RS25635 (V1M48_25635) - 3382869..3383360 (-) 492 WP_005448492.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27641.74 Da        Isoelectric Point: 8.5728

>NTDB_id=929702 V1M48_RS25610 WP_050907059.1 3378792..3379517(+) (comF) [Vibrio harveyi strain WHSS0915]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFGHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIMDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=929702 V1M48_RS25610 WP_050907059.1 3378792..3379517(+) (comF) [Vibrio harveyi strain WHSS0915]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGGCCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGTGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTATGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.286

100

0.913
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465