Detailed information NTG0092962

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: R8917_RS07165
• Genome accession: NZ_AP028344
• Coordinates: 1384961..1385968 (+)
• Length: 335 a.a.
• NCBI ID: WP_002853804.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BCH-10331
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1379961..1390968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8917_RS07145 (B10331_14000)	nrfH	1381228..1381743 (-)	516	WP_050552584.1	cytochrome c nitrite reductase small subunit	-
R8917_RS07150 (B10331_14010)	ppk	1381932..1384016 (+)	2085	WP_002860421.1	RNA degradosome polyphosphate kinase	-
R8917_RS07160 (B10331_14020)	-	1384460..1384870 (-)	411	WP_002783915.1	hypothetical protein	-
R8917_RS07165 (B10331_14030)	ruvB	1384961..1385968 (+)	1008	WP_002853804.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
R8917_RS07170 (B10331_14040)	amaA	1385972..1387015 (+)	1044	WP_218983171.1	AI-2E family transporter	-
R8917_RS07175 (B10331_14050)	fumC	1387045..1388436 (-)	1392	WP_218983170.1	class II fumarate hydratase	-
R8917_RS07180 (B10331_14060)	glmS	1388573..1390369 (-)	1797	WP_002853885.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37383.91 Da
• Isoelectric Point: 4.8396

>NTDB_id=92962 R8917_RS07165 WP_002853804.1 1384961..1385968(+) (ruvB) [Campylobacter jejuni strain BCH-10331]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFITAAKKRNECLDHILFSGPAGLGKTTLANIISYEMDANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide

• Length: 1008 bp

>NTDB_id=92962 R8917_RS07165 WP_002853804.1 1384961..1385968(+) (ruvB) [Campylobacter jejuni strain BCH-10331]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAACTGCAGCCAAAAAACGCAACGAATGTTTAGATC
ATATACTTTTTAGCGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGACGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGGGATTTAGCAGCCATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCATCGCTTAAGCCCTGCTATCGAAGAAGTGCTTTACCCTGCGATGGAAGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATTGATTTACCAAAATTTACTCTCATAGGGGCTACAACACGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGCATGCAATTTAGATTAGAATTTTACAAAGATAGTGAACTTGC
CCTCATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACTCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGAGCTAATGAGGCTTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACTGCTGCCAAACAAAAACCTATCGGACTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (255-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	69.461	99.701	0.693
ruvB	Bacillus subtilis subsp. subtilis str. 168	52.454	97.313	0.51
ruvB	Synechocystis sp. PCC 6803	49.533	95.821	0.475
ruvB	Streptococcus pneumoniae TIGR4	48.328	98.209	0.475
ruvB	Streptococcus pneumoniae R6	48.328	98.209	0.475
ruvB	Streptococcus pneumoniae D39	48.328	98.209	0.475